BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016191
         (1011 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279047.1| PREDICTED: mediator of RNA polymerase II tra...   272   1e-70
ref|XP_004166615.1| PREDICTED: mediator of RNA polymerase II tra...   267   3e-69
ref|XP_004146891.1| PREDICTED: mediator of RNA polymerase II tra...   265   1e-68
ref|NP_197491.2| mediator of RNA polymerase II transcription sub...   258   2e-66
gb|AFK36513.1| unknown [Medicago truncatula]                          258   2e-66

>ref|XP_002279047.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31
           [Vitis vinifera] gi|297737389|emb|CBI26590.3| unnamed
           protein product [Vitis vinifera]
          Length = 198

 Score =  272 bits (695), Expect = 1e-70
 Identities = 132/193 (68%), Positives = 148/193 (76%), Gaps = 2/193 (1%)
 Frame = +3

Query: 15  KDSNEDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 194
           K+S+   +TP++P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY
Sbjct: 5   KESDSAADTPTSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 64

Query: 195 LKYLQYWQRPEYLKFIMYPHCLYFLQLVQNANFRNAMAHPGSKELAHRQQFFFWKNYRNN 374
           LKYLQYWQ+PEY+KFIMYPHCL+FL+L+QNANFRNAMAHPGSKELAHRQQFF+WKNYRNN
Sbjct: 65  LKYLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNN 124

Query: 375 RLKHIVPRPLXXXXXXXXXXXXXXXXXXXXXXXXXXX--QALSPMQYGVXXXXXXXXKND 548
           RLKHI+P+PL                              ALSPMQYG+        KND
Sbjct: 125 RLKHILPKPLPEPLAGTPAPGPPPQSAPPTTIAVTSAGSPALSPMQYGIPAGSSLS-KND 183

Query: 549 MRNIGGDRRKRKE 587
           MRN   DRRKRK+
Sbjct: 184 MRNSAIDRRKRKK 196


>ref|XP_004166615.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           31-like [Cucumis sativus]
          Length = 206

 Score =  267 bits (682), Expect = 3e-69
 Identities = 132/198 (66%), Positives = 148/198 (74%), Gaps = 7/198 (3%)
 Frame = +3

Query: 27  EDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYL 206
           E+ + PS+P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYL
Sbjct: 10  EEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYL 69

Query: 207 QYWQRPEYLKFIMYPHCLYFLQLVQNANFRNAMAHPGSKELAHRQQFFFWKNYRNNRLKH 386
           QYWQRPEY+KFIMYPHCL+FL+L+QN+NFRNAMAHPG+KELAHRQQF+FWKNYRNNRLKH
Sbjct: 70  QYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKH 129

Query: 387 IVPRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXQA------LSPMQYGVXXXXXXXXKND 548
           I+PRPL                            A      LSPMQYG+        KND
Sbjct: 130 ILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPMQYGIPPGPGLP-KND 188

Query: 549 MRNIGGDRRKRK-ERSVS 599
           M+  G DRRKRK ERS++
Sbjct: 189 MKGAGIDRRKRKHERSMT 206


>ref|XP_004146891.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           31-like [Cucumis sativus]
          Length = 206

 Score =  265 bits (678), Expect = 1e-68
 Identities = 131/198 (66%), Positives = 148/198 (74%), Gaps = 7/198 (3%)
 Frame = +3

Query: 27  EDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYL 206
           E+ + PS+P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYL
Sbjct: 10  EEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYL 69

Query: 207 QYWQRPEYLKFIMYPHCLYFLQLVQNANFRNAMAHPGSKELAHRQQFFFWKNYRNNRLKH 386
           QYWQRPEY+KFIMYPHCL+FL+L+QN+NFRNAMAHPG+KELAHRQQF+FWKNYRNNRLKH
Sbjct: 70  QYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKH 129

Query: 387 IVPRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXQA------LSPMQYGVXXXXXXXXKND 548
           I+PRPL                            A      LSP+QYG+        KND
Sbjct: 130 ILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPIQYGIPPGPGLP-KND 188

Query: 549 MRNIGGDRRKRK-ERSVS 599
           M+  G DRRKRK ERS++
Sbjct: 189 MKGAGIDRRKRKHERSMT 206


>ref|NP_197491.2| mediator of RNA polymerase II transcription subunit 31 [Arabidopsis
           thaliana] gi|38258620|sp|Q8VYB1.1|MED31_ARATH RecName:
           Full=Mediator of RNA polymerase II transcription subunit
           31; AltName: Full=Mediator complex subunit 31; AltName:
           Full=Mediator complex subunit SOH1
           gi|18176433|gb|AAL60043.1| putative SOH1 protein
           [Arabidopsis thaliana] gi|27754239|gb|AAO22573.1|
           putative SOH1 protein [Arabidopsis thaliana]
           gi|332005381|gb|AED92764.1| mediator of RNA polymerase
           II transcription subunit 31 [Arabidopsis thaliana]
          Length = 196

 Score =  258 bits (659), Expect = 2e-66
 Identities = 126/191 (65%), Positives = 139/191 (72%), Gaps = 3/191 (1%)
 Frame = +3

Query: 24  NEDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKY 203
           ++ +E PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDEAFIGYLKY
Sbjct: 9   DDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKY 68

Query: 204 LQYWQRPEYLKFIMYPHCLYFLQLVQNANFRNAMAHPGSKELAHRQQFFFWKNYRNNRLK 383
           LQYWQRPEY+KFIMYPHCLYFL+L+QN NFR AMAHP +KELAHRQQF++WKNYRNNRLK
Sbjct: 69  LQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLK 128

Query: 384 HIVPRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXQALSPMQYGVXXXXXXXXKNDMRNIG 563
           HI+PRPL                            ALSPMQY          KND RN+G
Sbjct: 129 HILPRPLPEPVPPQPPVAPSTSLPPAPSATAALSPALSPMQYN-----NMLSKNDTRNMG 183

Query: 564 G---DRRKRKE 587
               DRRKRK+
Sbjct: 184 ATGIDRRKRKK 194


>gb|AFK36513.1| unknown [Medicago truncatula]
          Length = 204

 Score =  258 bits (658), Expect = 2e-66
 Identities = 130/205 (63%), Positives = 143/205 (69%), Gaps = 11/205 (5%)
 Frame = +3

Query: 3   LAFDKDSNEDTETPSTPP-NLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 179
           +A   +S    +TP +PP ++YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKTESGSPRDTPPSPPKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 180 AFIGYLKYLQYWQRPEYLKFIMYPHCLYFLQLVQNANFRNAMAHPGSKELAHRQQFFFWK 359
           AFIGYLKYLQYWQRPEY+KFIMYPHCLYFL+L+QNANFRNAMAHP +KEL HRQQF+FWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELTHRQQFYFWK 120

Query: 360 NYRNNRLKHIVPRPL----------XXXXXXXXXXXXXXXXXXXXXXXXXXXQALSPMQY 509
           NYRNNRLKHI+PR L                                     QA SPM Y
Sbjct: 121 NYRNNRLKHILPRSLAEPSAALPAPASTQPQPPVPALPPVPATSVAVTTSSSQAPSPMPY 180

Query: 510 GVXXXXXXXXKNDMRNIGGDRRKRK 584
           G+        KNDMRN   DRRKRK
Sbjct: 181 GI-PPGSGIAKNDMRNTSADRRKRK 204