BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016143
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    56   3e-06

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/76 (36%), Positives = 35/76 (46%)
 Frame = -1

Query: 236 EDEDYRIWCQDSKGKFSTKSAFESIRRTRPKVSWYKNIWNNFIHPRTAATGWKLLHGCAA 57
           E  D  IW     G  S K AF  +    P V W K +WN +  P  A   W+ LH    
Sbjct: 38  ETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLP 97

Query: 56  TDDRIQKSGIRLVSAC 9
           TDD ++K G  +VS C
Sbjct: 98  TDDNLRKRGCYIVSIC 113