BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016050
         (634 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containi...   346   2e-93
ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...   346   2e-93
ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata] gi...   335   4e-90
ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|2...   333   2e-89
ref|XP_002525184.1| pentatricopeptide repeat-containing protein,...   332   3e-89

>ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
            chloroplastic-like [Glycine max]
          Length = 716

 Score =  346 bits (888), Expect = 2e-93
 Identities = 165/212 (77%), Positives = 192/212 (90%), Gaps = 2/212 (0%)
 Frame = +3

Query: 3    RVGVPANRITYNILLKGYCQQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDS 182
            R+GVPAN ITYN+LLKGYC+Q+ ++KA+EL+KEM +DAGI+PDVVSYNI+IDGCIL+DDS
Sbjct: 413  RIGVPANLITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDS 472

Query: 183  AGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNM 362
            AGAL++FNEMRARGIAP+KISYTTLMKAFA +GQPKL + VF+EM  DPRVKVDL+AWNM
Sbjct: 473  AGALSFFNEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEMDSDPRVKVDLIAWNM 532

Query: 363  LVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERL 542
            LVEGYCR GLVEEAKKV+Q+M+E GFHPDV TYGSLANGIALARKPGEALLLWNE+KER 
Sbjct: 533  LVEGYCRLGLVEEAKKVVQKMKESGFHPDVGTYGSLANGIALARKPGEALLLWNEVKERC 592

Query: 543  KGGEEG--IPPSVPPLKPDAGLLDTLADVCVR 632
            + G+EG     SVPPLKPD  LLDT+AD+CVR
Sbjct: 593  EVGKEGGKSDSSVPPLKPDGALLDTIADICVR 624



 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
 Frame = +3

Query: 9   GVPANRITYNILLKGYCQQVNVEKAKELIKEME--NDAGIEPDVVSYNIVIDGCILIDDS 182
           G   N  TY  L+KGY     V     +++ M   +D G +PD VSY  V+   + +   
Sbjct: 342 GYAPNTRTYTTLMKGYMNAGRVSDTVRMLEAMRRLDDKGSQPDHVSYTTVVSALVKVGAM 401

Query: 183 AGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNM 362
             A     EM   G+  + I+Y  L+K +    Q      +  EM  D  ++ D+V++N+
Sbjct: 402 DRARQVLAEMTRIGVPANLITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNI 461

Query: 363 LVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEI 530
           L++G         A      MR  G  P   +Y +L    A + +P  A  ++NE+
Sbjct: 462 LIDGCILVDDSAGALSFFNEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEM 517


>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
            chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  346 bits (887), Expect = 2e-93
 Identities = 169/212 (79%), Positives = 190/212 (89%), Gaps = 2/212 (0%)
 Frame = +3

Query: 3    RVGVPANRITYNILLKGYCQQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDS 182
            R+GVPANR+TYNILLKGYC+Q+ ++KAKEL++EM +D GI PDVVSYN +IDGCIL+DDS
Sbjct: 447  RIGVPANRVTYNILLKGYCEQLQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDS 506

Query: 183  AGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNM 362
            AGALAYFNEMRARGIAP+KISYTTLMKAFAL+GQPKL N VFDEM +DPRVKVDLVAWNM
Sbjct: 507  AGALAYFNEMRARGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNM 566

Query: 363  LVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERL 542
            LVE +CR GLVEEAKK +QRMRE+GF+P+VATYGSLANGIALARKPGEALLLWNE+KER 
Sbjct: 567  LVEAHCRLGLVEEAKKTVQRMRENGFYPNVATYGSLANGIALARKPGEALLLWNEVKERC 626

Query: 543  KGGEEG--IPPSVPPLKPDAGLLDTLADVCVR 632
               EEG     S PPLKPD GLLDTLAD+CVR
Sbjct: 627  VVKEEGEISKSSPPPLKPDEGLLDTLADICVR 658



 Score = 62.4 bits (150), Expect = 7e-08
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%)
 Frame = +3

Query: 15  PANRITYNILLKGYCQQVNVEKAKELIKEM--ENDAGIEPDVVSYNIVIDGCILIDDSAG 188
           P +RI Y  L+KGY ++  V     +++ M  ++D+  +PD V+Y  V+   +       
Sbjct: 379 PDSRI-YTTLMKGYMKEGRVTDTVRMLEAMRHQDDSTSQPDHVTYTTVVSALVKAGSMDR 437

Query: 189 ALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLV 368
           A     EM   G+  ++++Y  L+K +    Q      +  EM  D  +  D+V++N L+
Sbjct: 438 ARQVLAEMTRIGVPANRVTYNILLKGYCEQLQIDKAKELVREMVDDEGIVPDVVSYNTLI 497

Query: 369 EGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEI 530
           +G         A      MR  G  P   +Y +L    AL+ +P  A  +++E+
Sbjct: 498 DGCILVDDSAGALAYFNEMRARGIAPTKISYTTLMKAFALSGQPKLANKVFDEM 551


>ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata] gi|297328472|gb|EFH58891.1|
            HCF152 [Arabidopsis lyrata subsp. lyrata]
          Length = 772

 Score =  335 bits (859), Expect = 4e-90
 Identities = 159/216 (73%), Positives = 191/216 (88%), Gaps = 6/216 (2%)
 Frame = +3

Query: 3    RVGVPANRITYNILLKGYCQQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDS 182
            R+GVPANRITYN+LLKGYC+Q+ +++A++L++EM  DAGIEPDVVSYNI+IDGCILIDDS
Sbjct: 474  RMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMAEDAGIEPDVVSYNIIIDGCILIDDS 533

Query: 183  AGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNM 362
            AGALA+FNEMR RGIAP+KISYTTLMKAFA++GQPKL N VFDEM  DPRVKVDL+AWNM
Sbjct: 534  AGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNM 593

Query: 363  LVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERL 542
            LVEGYCR GL+E+A++V+ RM+E+GF+P+VATYGSLANG++LARKPGEALLLW EIKER 
Sbjct: 594  LVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSLARKPGEALLLWKEIKERC 653

Query: 543  KGGEEGIP------PSVPPLKPDAGLLDTLADVCVR 632
            +  ++  P      PS P LKPD GLLDTLAD+CVR
Sbjct: 654  EVKKKEAPSDSSSDPSPPMLKPDEGLLDTLADICVR 689



 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 5/181 (2%)
 Frame = +3

Query: 3   RVGVPANRITYNILLKGYCQQVNVEKAKELIKEM--ENDAGIEPDVVSYNIVIDGCI--- 167
           +V  P +RI Y  L+KGY +   V     +++ M  ++D    PD V+Y  V+   +   
Sbjct: 402 KVFAPDSRI-YTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVKAG 460

Query: 168 LIDDSAGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDL 347
           L+D +   LA   EM   G+  ++I+Y  L+K +    Q     ++  EM +D  ++ D+
Sbjct: 461 LMDRARQVLA---EMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMAEDAGIEPDV 517

Query: 348 VAWNMLVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNE 527
           V++N++++G         A      MR  G  P   +Y +L    A++ +P  A  +++E
Sbjct: 518 VSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDE 577

Query: 528 I 530
           +
Sbjct: 578 M 578


>ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|222867485|gb|EEF04616.1|
            predicted protein [Populus trichocarpa]
          Length = 751

 Score =  333 bits (853), Expect = 2e-89
 Identities = 165/214 (77%), Positives = 185/214 (86%), Gaps = 4/214 (1%)
 Frame = +3

Query: 3    RVGVPANRITYNILLKGYCQQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDS 182
            R+GVPANRITYNILLKGYCQQ+ ++KAKEL+KEM +D  IEPDVVSYN +IDGCIL+DDS
Sbjct: 453  RIGVPANRITYNILLKGYCQQLQIDKAKELLKEMADDVNIEPDVVSYNTLIDGCILVDDS 512

Query: 183  AGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNM 362
            AGALA+FNEMR +GI P+KISYTTLMKAFAL+GQPKL N VFDEM KDPRVK DLVAWNM
Sbjct: 513  AGALAFFNEMRTKGIMPTKISYTTLMKAFALSGQPKLANKVFDEMLKDPRVKADLVAWNM 572

Query: 363  LVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKER- 539
            L+EGYCR GLV+EAK VIQRM+E+GFHPDVATYGSLANGI+LARKPGEALLLW E+KER 
Sbjct: 573  LLEGYCRLGLVDEAKTVIQRMKENGFHPDVATYGSLANGISLARKPGEALLLWKEVKERW 632

Query: 540  -LKGGEEGIPPSVP--PLKPDAGLLDTLADVCVR 632
             +KG  E      P  PLKPD  LL TLAD+CVR
Sbjct: 633  EVKGEGESSNSDSPLLPLKPDEELLATLADICVR 666



 Score = 66.6 bits (161), Expect = 4e-09
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   RVGVPANRITYNILLKGYCQQVNVEKAKELIKEM--ENDAGIEPDVVSYNIVIDGCILID 176
           +V  P +RI +  L+KGY +Q  V     +++ M  ++D+  +PD ++Y  VI   +   
Sbjct: 381 KVFAPDSRI-FTTLMKGYMKQGRVTDTVRMLEAMRCQDDSKGQPDHITYTTVISALVKAG 439

Query: 177 DSAGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAW 356
               A     EM   G+  ++I+Y  L+K +    Q      +  EM  D  ++ D+V++
Sbjct: 440 SMDPARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLKEMADDVNIEPDVVSY 499

Query: 357 NMLVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEI 530
           N L++G         A      MR  G  P   +Y +L    AL+ +P  A  +++E+
Sbjct: 500 NTLIDGCILVDDSAGALAFFNEMRTKGIMPTKISYTTLMKAFALSGQPKLANKVFDEM 557


>ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535481|gb|EEF37150.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 740

 Score =  332 bits (851), Expect = 3e-89
 Identities = 160/216 (74%), Positives = 191/216 (88%), Gaps = 6/216 (2%)
 Frame = +3

Query: 3    RVGVPANRITYNILLKGYCQQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDS 182
            R+GVPANRITYNILLKG+CQ + ++KAKEL+KEM+ +A IEPDVVSYN +IDGCI +DDS
Sbjct: 443  RIGVPANRITYNILLKGHCQHLQIDKAKELLKEMDENAEIEPDVVSYNTMIDGCIQVDDS 502

Query: 183  AGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNM 362
            AGALA+FNEMR +GIAP+KISYTTLMKAF+L+GQPKL N VFDEM KDPRVKVDL+AWN+
Sbjct: 503  AGALAFFNEMREKGIAPTKISYTTLMKAFSLSGQPKLANQVFDEMFKDPRVKVDLIAWNV 562

Query: 363  LVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERL 542
            LVE YC+ GLVE+AKK+IQRM+E+GFHP+VATYGSLA+GIALARKPGEAL+LWNE+KERL
Sbjct: 563  LVEAYCKLGLVEQAKKIIQRMKENGFHPNVATYGSLASGIALARKPGEALILWNEVKERL 622

Query: 543  KGGEEG------IPPSVPPLKPDAGLLDTLADVCVR 632
            +  +EG      +PP  P  KPD G+LDTLAD+CVR
Sbjct: 623  EMQKEGHNSKSDLPPP-PAFKPDEGMLDTLADICVR 657



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   RVGVPANRITYNILLKGYCQQVNVEKAKELIKEM--ENDAGIEPDVVSYNIVIDGCILID 176
           +V  P +RI Y  L+KGY  Q  V     +++ M  ++D    PD VSY  VI   +   
Sbjct: 371 KVYAPDSRI-YTTLMKGYMNQGRVSDTIRMLEAMRHQDDNASHPDHVSYTTVISALVKAG 429

Query: 177 DSAGALAYFNEMRARGIAPSKISYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAW 356
               A     EM   G+  ++I+Y  L+K      Q      +  EM ++  ++ D+V++
Sbjct: 430 SMDRARQVLAEMTRIGVPANRITYNILLKGHCQHLQIDKAKELLKEMDENAEIEPDVVSY 489

Query: 357 NMLVEGYCRQGLVEEAKKVIQRMREDGFHPDVATYGSLANGIALARKPGEALLLWNEI 530
           N +++G  +      A      MRE G  P   +Y +L    +L+ +P  A  +++E+
Sbjct: 490 NTMIDGCIQVDDSAGALAFFNEMREKGIAPTKISYTTLMKAFSLSGQPKLANQVFDEM 547