BLASTX nr result

ID: Coptis23_contig00016018 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016018
         (921 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521113.1| pantoate-beta-alanine ligase, putative [Rici...   285   e-106
gb|AAM62758.1| pantoate-beta-alanine ligase [Arabidopsis thaliana]    262   4e-96
ref|NP_199695.1| pantoate--beta-alanine ligase [Arabidopsis thal...   261   7e-96
ref|XP_002865683.1| pantoate-beta-alanine ligase [Arabidopsis ly...   265   2e-95
ref|XP_002266330.1| PREDICTED: pantoate--beta-alanine ligase-lik...   292   7e-77

>ref|XP_002521113.1| pantoate-beta-alanine ligase, putative [Ricinus communis]
           gi|223539682|gb|EEF41264.1| pantoate-beta-alanine
           ligase, putative [Ricinus communis]
          Length = 325

 Score =  285 bits (730), Expect(2) = e-106
 Identities = 143/177 (80%), Positives = 159/177 (89%)
 Frame = +3

Query: 378 ETWVRVERLEKGMCGKSRPVFFRGVATIVTKLFNIVEPDVAIFGKKDYQQWRIICRMVRD 557
           ETWVRVERLEKGMCGKSRPVFFRGVATIVTKL NIVEPD A+FGKKDYQQWRII RMVRD
Sbjct: 149 ETWVRVERLEKGMCGKSRPVFFRGVATIVTKLLNIVEPDFAMFGKKDYQQWRIIQRMVRD 208

Query: 558 LDFAVTIIGSEIVREADGLAMSSRNVRLLPEERNKALSINRSLSRAKLTAQNDQISCRNL 737
           LDF++ I+GSEI+R++DGLA+SSRNV L  E+R KALSI+RSL  AK  A+  QI+CR L
Sbjct: 209 LDFSIRIVGSEIMRDSDGLALSSRNVHLSAEDREKALSISRSLLEAKSCAEKGQINCREL 268

Query: 738 RDLVTQAILEAGGKIDYAEIVDQENLEAVEEIKSPVVFCVAAWFGKVRLLDNVEIDV 908
           RDLV QAI  AGGKIDYAEIVDQE+LEAVEEIKSPVVFCVAAWFGKVRL+DNVEI++
Sbjct: 269 RDLVIQAINGAGGKIDYAEIVDQESLEAVEEIKSPVVFCVAAWFGKVRLIDNVEINI 325



 Score =  125 bits (315), Expect(2) = e-106
 Identities = 62/91 (68%), Positives = 76/91 (83%), Gaps = 2/91 (2%)
 Frame = +1

Query: 1   LVPTMGYLHEGHISLIKEAQKHSDVIVVSIYVNPGQFSPSEDLSTYPSDFQGDLDKLKAL 180
           LVPTMGYLH+GH+SL+KEA+  +++IVVSIYVNPGQFSPSEDLSTYPSDF GD+ KL ++
Sbjct: 32  LVPTMGYLHQGHLSLVKEARSLANLIVVSIYVNPGQFSPSEDLSTYPSDFHGDILKLMSV 91

Query: 181 P--VNVVFHPYNLYDYGNSDIESKNNDPKSN 267
           P  V+VVFHP+NLYDY   D + KN +  SN
Sbjct: 92  PGGVDVVFHPHNLYDYYKID-DDKNKNGNSN 121


>gb|AAM62758.1| pantoate-beta-alanine ligase [Arabidopsis thaliana]
          Length = 310

 Score =  262 bits (669), Expect(2) = 4e-96
 Identities = 126/177 (71%), Positives = 150/177 (84%)
 Frame = +3

Query: 378 ETWVRVERLEKGMCGKSRPVFFRGVATIVTKLFNIVEPDVAIFGKKDYQQWRIICRMVRD 557
           ETW+RVERLEKG+CGKSRPVFFRGVATIVTKLFNIVEPDVA+FGKKDYQQWRII RMVRD
Sbjct: 132 ETWIRVERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQWRIIQRMVRD 191

Query: 558 LDFAVTIIGSEIVREADGLAMSSRNVRLLPEERNKALSINRSLSRAKLTAQNDQISCRNL 737
           L+F + I+GS+I RE DGLAMSSRNVRL  EER +ALSI+RSL+ AK +    + +C  L
Sbjct: 192 LNFGIEIVGSDIAREKDGLAMSSRNVRLSDEERQRALSISRSLAMAKASVAEGKTNCAEL 251

Query: 738 RDLVTQAILEAGGKIDYAEIVDQENLEAVEEIKSPVVFCVAAWFGKVRLLDNVEIDV 908
           +D++ Q ++ + G++DY EIVDQE LE VEEIKS VV CVAAWFG VRL+DN+EI+V
Sbjct: 252 KDMIIQQVVGSAGRVDYVEIVDQETLEGVEEIKSGVVICVAAWFGTVRLIDNIEINV 308



 Score =  116 bits (291), Expect(2) = 4e-96
 Identities = 61/93 (65%), Positives = 69/93 (74%), Gaps = 2/93 (2%)
 Frame = +1

Query: 1   LVPTMGYLHEGHISLIKEAQKHSDVIVVSIYVNPGQFSPSEDLSTYPSDFQGDLDKLKAL 180
           LVPTMGYLHEGH+SL++++   +DV VVSIYVNPGQFSP+EDLSTYPSDF GDL KL AL
Sbjct: 28  LVPTMGYLHEGHLSLVRQSLALTDVTVVSIYVNPGQFSPTEDLSTYPSDFSGDLTKLAAL 87

Query: 181 PVN--VVFHPYNLYDYGNSDIESKNNDPKSNDG 273
                VVF+P NLYDYG      K ND   N G
Sbjct: 88  SGGKVVVFNPKNLYDYGGE--TKKINDGGGNGG 118


>ref|NP_199695.1| pantoate--beta-alanine ligase [Arabidopsis thaliana]
           gi|20139170|sp|Q9FKB3.1|PANC_ARATH RecName:
           Full=Pantoate--beta-alanine ligase; AltName:
           Full=Pantoate-activating enzyme; AltName:
           Full=Pantothenate synthetase gi|9758883|dbj|BAB09437.1|
           pantoate-beta-alanine ligase [Arabidopsis thaliana]
           gi|51968618|dbj|BAD43001.1| pantoate-beta-alanine ligase
           [Arabidopsis thaliana] gi|332008349|gb|AED95732.1|
           pantoate--beta-alanine ligase [Arabidopsis thaliana]
          Length = 310

 Score =  261 bits (667), Expect(2) = 7e-96
 Identities = 126/177 (71%), Positives = 149/177 (84%)
 Frame = +3

Query: 378 ETWVRVERLEKGMCGKSRPVFFRGVATIVTKLFNIVEPDVAIFGKKDYQQWRIICRMVRD 557
           ETW+RVERLEKG CGKSRPVFFRGVATIVTKLFNIVEPDVA+FGKKDYQQWRII RMVRD
Sbjct: 132 ETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQWRIIQRMVRD 191

Query: 558 LDFAVTIIGSEIVREADGLAMSSRNVRLLPEERNKALSINRSLSRAKLTAQNDQISCRNL 737
           L+F + I+GS+I RE DGLAMSSRNVRL  EER +ALSI+RSL+ AK +    + +C  L
Sbjct: 192 LNFGIEIVGSDIAREKDGLAMSSRNVRLSDEERQRALSISRSLAMAKASVAEGKTNCAEL 251

Query: 738 RDLVTQAILEAGGKIDYAEIVDQENLEAVEEIKSPVVFCVAAWFGKVRLLDNVEIDV 908
           +D++ Q ++ + G++DY EIVDQE LE VEEIKS VV CVAAWFG VRL+DN+EI+V
Sbjct: 252 KDMIIQQVVGSAGRVDYVEIVDQETLEGVEEIKSGVVICVAAWFGTVRLIDNIEINV 308



 Score =  116 bits (291), Expect(2) = 7e-96
 Identities = 61/93 (65%), Positives = 69/93 (74%), Gaps = 2/93 (2%)
 Frame = +1

Query: 1   LVPTMGYLHEGHISLIKEAQKHSDVIVVSIYVNPGQFSPSEDLSTYPSDFQGDLDKLKAL 180
           LVPTMGYLHEGH+SL++++   +DV VVSIYVNPGQFSP+EDLSTYPSDF GDL KL AL
Sbjct: 28  LVPTMGYLHEGHLSLVRQSLALTDVTVVSIYVNPGQFSPTEDLSTYPSDFSGDLTKLAAL 87

Query: 181 PVN--VVFHPYNLYDYGNSDIESKNNDPKSNDG 273
                VVF+P NLYDYG      K ND   N G
Sbjct: 88  SGGKVVVFNPKNLYDYGGE--TKKINDGGGNGG 118


>ref|XP_002865683.1| pantoate-beta-alanine ligase [Arabidopsis lyrata subsp. lyrata]
           gi|297311518|gb|EFH41942.1| pantoate-beta-alanine ligase
           [Arabidopsis lyrata subsp. lyrata]
          Length = 310

 Score =  265 bits (678), Expect(2) = 2e-95
 Identities = 128/177 (72%), Positives = 150/177 (84%)
 Frame = +3

Query: 378 ETWVRVERLEKGMCGKSRPVFFRGVATIVTKLFNIVEPDVAIFGKKDYQQWRIICRMVRD 557
           ETW+RVERLEKG+CGKSRPVFFRGVATIVTKLFNIVEPDVA+FGKKDYQQWRII RMVRD
Sbjct: 132 ETWIRVERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWRIIQRMVRD 191

Query: 558 LDFAVTIIGSEIVREADGLAMSSRNVRLLPEERNKALSINRSLSRAKLTAQNDQISCRNL 737
           LDF + I+GS+I RE DGLAMSSRNVRL  EER +ALSI+RSL+ AK +    + SC  L
Sbjct: 192 LDFGIEIVGSDIAREKDGLAMSSRNVRLSDEERQRALSISRSLAMAKASVAEGKTSCAEL 251

Query: 738 RDLVTQAILEAGGKIDYAEIVDQENLEAVEEIKSPVVFCVAAWFGKVRLLDNVEIDV 908
           +D++ + ++ + G++DY EIVDQE LE VEEIKS VV CVAAWFG VRL+DN+EIDV
Sbjct: 252 KDMIIKQLVGSAGRVDYVEIVDQETLEGVEEIKSGVVICVAAWFGTVRLIDNIEIDV 308



 Score =  111 bits (277), Expect(2) = 2e-95
 Identities = 60/93 (64%), Positives = 70/93 (75%), Gaps = 2/93 (2%)
 Frame = +1

Query: 1   LVPTMGYLHEGHISLIKEAQKHSDVIVVSIYVNPGQFSPSEDLSTYPSDFQGDLDKLKAL 180
           LVPTMGYLHEGH+SL++++   +DV VVSIYVNPGQFS +EDLSTYPSDF GDL KL A+
Sbjct: 28  LVPTMGYLHEGHLSLVRQSLTLTDVTVVSIYVNPGQFSSTEDLSTYPSDFSGDLTKLAAI 87

Query: 181 PVN--VVFHPYNLYDYGNSDIESKNNDPKSNDG 273
                VVF+P NLYDYG    E+K    K NDG
Sbjct: 88  SGGKVVVFNPKNLYDYGG---ETK----KINDG 113


>ref|XP_002266330.1| PREDICTED: pantoate--beta-alanine ligase-like [Vitis vinifera]
          Length = 315

 Score =  292 bits (748), Expect = 7e-77
 Identities = 147/176 (83%), Positives = 161/176 (91%)
 Frame = +3

Query: 378 ETWVRVERLEKGMCGKSRPVFFRGVATIVTKLFNIVEPDVAIFGKKDYQQWRIICRMVRD 557
           ETWVRVERLEK MCGKSRPVFFRGVATIV+KLFNIVEPDVA+FGKKDYQQWRII RMVRD
Sbjct: 139 ETWVRVERLEKSMCGKSRPVFFRGVATIVSKLFNIVEPDVAVFGKKDYQQWRIISRMVRD 198

Query: 558 LDFAVTIIGSEIVREADGLAMSSRNVRLLPEERNKALSINRSLSRAKLTAQNDQISCRNL 737
           LDFA+ +IGSEIVR+ADGLAMSSRNV L PEER KALSINRSLSRAK  A+  Q +CR L
Sbjct: 199 LDFAIKVIGSEIVRDADGLAMSSRNVHLSPEEREKALSINRSLSRAKFAAEKGQTNCREL 258

Query: 738 RDLVTQAILEAGGKIDYAEIVDQENLEAVEEIKSPVVFCVAAWFGKVRLLDNVEID 905
           RDLV QAI EAGG+IDYAEIV+QE+LEAVEEI++PVVFCVAA FGKVRLLDN+EI+
Sbjct: 259 RDLVIQAIEEAGGRIDYAEIVEQESLEAVEEIRNPVVFCVAARFGKVRLLDNMEIN 314



 Score =  134 bits (336), Expect = 4e-29
 Identities = 63/78 (80%), Positives = 71/78 (91%), Gaps = 2/78 (2%)
 Frame = +1

Query: 1   LVPTMGYLHEGHISLIKEAQKHSDVIVVSIYVNPGQFSPSEDLSTYPSDFQGDLDKLKAL 180
           LVPTMGYLH+GHISLIKEA KH+D+IVVSIYVNPGQF+PSEDLSTYPSDF GDL KL A+
Sbjct: 31  LVPTMGYLHQGHISLIKEAHKHTDLIVVSIYVNPGQFAPSEDLSTYPSDFHGDLQKLMAV 90

Query: 181 P--VNVVFHPYNLYDYGN 228
           P  V+ VFHP+NLYDYG+
Sbjct: 91  PGGVDAVFHPHNLYDYGS 108


Top