BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014777
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   180   1e-43
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   180   1e-43
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              179   2e-43
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...   178   4e-43
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   171   7e-41

>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  180 bits (456), Expect = 1e-43
 Identities = 98/184 (53%), Positives = 122/184 (66%), Gaps = 15/184 (8%)
 Frame = -3

Query: 511 SWRPPLTTSYAVGVLMGNKLHLNPVHAVVQLRPSMEHLKSGG--------------SNEI 374
           SW+PPL TSYAVG+LMGNKLHLNPVHAVVQLRPS EHL SGG              S E 
Sbjct: 201 SWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRKNNVRADSDVKSEEH 260

Query: 373 TEVKAIGSSKQHGKLVKSSTEQVTAVEESWIPLDYYGMDSSANSLSTRYRQKMTSQESFE 194
            +V + G+S++  K    STE  T  EE WIPL YYG++S    LSTR+ Q M SQ    
Sbjct: 261 VDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLES---DLSTRHLQSMVSQTVSP 317

Query: 193 IQFSMSSYGYVNSLCPGSTTDNDRYR-ILKRSLLSLPLAEKFKRWFLEGPPLNRFNALKH 17
           +QFSMS + Y++SLCPG++T  ++ +   K+ LLSL L E+ K+   EGPP+ RF+ALKH
Sbjct: 318 MQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKH 377

Query: 16  LAPD 5
            APD
Sbjct: 378 YAPD 381


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Cucumis sativus]
          Length = 702

 Score =  180 bits (456), Expect = 1e-43
 Identities = 98/184 (53%), Positives = 122/184 (66%), Gaps = 15/184 (8%)
 Frame = -3

Query: 511 SWRPPLTTSYAVGVLMGNKLHLNPVHAVVQLRPSMEHLKSGG--------------SNEI 374
           SW+PPL TSYAVG+LMGNKLHLNPVHAVVQLRPS EHL SGG              S E 
Sbjct: 201 SWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRKNNVRADSDVKSEEH 260

Query: 373 TEVKAIGSSKQHGKLVKSSTEQVTAVEESWIPLDYYGMDSSANSLSTRYRQKMTSQESFE 194
            +V + G+S++  K    STE  T  EE WIPL YYG++S    LSTR+ Q M SQ    
Sbjct: 261 VDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLES---DLSTRHLQSMVSQTVSP 317

Query: 193 IQFSMSSYGYVNSLCPGSTTDNDRYR-ILKRSLLSLPLAEKFKRWFLEGPPLNRFNALKH 17
           +QFSMS + Y++SLCPG++T  ++ +   K+ LLSL L E+ K+   EGPP+ RF+ALKH
Sbjct: 318 MQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKH 377

Query: 16  LAPD 5
            APD
Sbjct: 378 YAPD 381


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  179 bits (454), Expect = 2e-43
 Identities = 97/188 (51%), Positives = 127/188 (67%), Gaps = 18/188 (9%)
 Frame = -3

Query: 511 SWRPPLTTSYAVGVLMGNKLHLNPVHAVVQLRPSMEHLKSGGS---NEIT---------- 371
           SW+PP TT Y VGVLMGNKLHLNP+HAVVQLRPSME+L SGG+   N +T          
Sbjct: 184 SWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNVTGDTNSAVKLE 243

Query: 370 ---EVKAIGSSKQHGKLVKSSTEQVTAVEESWIPLDYYGMDSSANSLSTRYRQKMTSQES 200
              E +++GS K+  K++    EQ T   ESW+PL Y+   SS +  S RY QKM ++++
Sbjct: 244 VSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYH---SSESDFSARYLQKMVAEDN 300

Query: 199 FEIQFSMSSYGYVNSLC-PGSTTDNDRYR-ILKRSLLSLPLAEKFKRWFLEGPPLNRFNA 26
             IQF MS Y YVNSLC PG + D++R + + +R LLS+PL E+FK    EGPP++RF+A
Sbjct: 301 SPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEGPPVHRFSA 360

Query: 25  LKHLAPDD 2
           LKH APD+
Sbjct: 361 LKHFAPDN 368


>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
           predicted protein [Populus trichocarpa]
          Length = 667

 Score =  178 bits (452), Expect = 4e-43
 Identities = 95/180 (52%), Positives = 121/180 (67%), Gaps = 10/180 (5%)
 Frame = -3

Query: 511 SWRPPLTTSYAVGVLMGNKLHLNPVHAVVQLRPSMEHLKSGGS---------NEITEVKA 359
           SW PP  T YAVGVL+GNKLHLNP+HAVVQLRPSM++L SG S          +  E K 
Sbjct: 191 SWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDYLSSGNSKGKKNATSGEDSNEGKP 250

Query: 358 IGSSKQHGKLVKSSTEQVTAVEESWIPLDYYGMDSSANSLSTRYRQKMTSQESFEIQFSM 179
           +G  K+  K + S  EQ   VEESWIPL Y+G   S + LS+RY Q M + ES  I+F+M
Sbjct: 251 LGLPKKQSKQMSSGNEQKPDVEESWIPLKYHG---SKSDLSSRYLQNMVAPESSTIEFAM 307

Query: 178 SSYGYVNSLCPGSTTDNDRYR-ILKRSLLSLPLAEKFKRWFLEGPPLNRFNALKHLAPDD 2
           + Y Y++SLCPG + +N +     +R LLSLPL E+ KR FLEGPP++RF AL+HL P+D
Sbjct: 308 NPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEERIKRLFLEGPPIHRFAALRHLIPND 367


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
           vinifera]
          Length = 672

 Score =  171 bits (432), Expect = 7e-41
 Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
 Frame = -3

Query: 511 SWRPPLTTSYAVGVLMGNKLHLNPVHAVVQLRPSMEHLKSGGSNEITEVKAIGSSKQHGK 332
           SW+PP TT Y VGVLMGNKLHLNP+HAVVQLRPSME+L SGG+     V   G +    K
Sbjct: 184 SWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNV--TGDTNSAVK 241

Query: 331 LVKSSTEQV--TAVEESWIPLDYYGMDSSANSLSTRYRQKMTSQESFEIQFSMSSYGYVN 158
           L  S+ E+   +  ++SW+PL Y+   SS +  S RY QKM ++++  IQF MS Y YVN
Sbjct: 242 LEVSNEEESVGSLKKQSWVPLKYH---SSESDFSARYLQKMVAEDNSPIQFLMSPYEYVN 298

Query: 157 SLC-PGSTTDNDRYR-ILKRSLLSLPLAEKFKRWFLEGPPLNRFNALKHLAPDD 2
           SLC PG + D++R + + +R LLS+PL E+FK    EGPP++RF+ALKH APD+
Sbjct: 299 SLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEGPPVHRFSALKHFAPDN 352