BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014482
         (2087 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   678   0.0  
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   662   0.0  
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      653   0.0  
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   645   0.0  
ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|2...   642   0.0  

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  678 bits (1749), Expect = 0.0
 Identities = 363/504 (72%), Positives = 420/504 (83%), Gaps = 5/504 (0%)
 Frame = +3

Query: 291  MATAAVIGLSVGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 470
            MATAAVIGLS GK  LSS+ YYSD+ +KL S ++HGL  +Q  STK +I AKKS+++G S
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 471  SPS-DRHAQAIKALKEHVNTYSA-ATADESLEKLDFMVEGNFDMESSLEALLLLQKSMLE 644
             PS +R+ Q+IKALKEHV+T SA +TA    +  + M E + D++ S+EALLLLQKSMLE
Sbjct: 61   FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 645  KQWNLSFEQRRTLKEPKEGSCNNVEVTGSGVSARQRRS--MRKYVTNSD-AVPPTRRKPI 815
            KQWNLSFE+  +   P   S   + VT SGVSARQRR    RK ++ S   V     K +
Sbjct: 121  KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 816  GLIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKSGLSLEDYKSKLKKRLGYDPS 995
               VSP+LL NR++ YVKGV+SEELL+HAEVV LS+ IK+GLSLED+KS+LK+RLG DPS
Sbjct: 181  KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240

Query: 996  EDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLI 1175
            ++Q+ATSL+IS AEL++K I CSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GLI
Sbjct: 241  DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRL 1355
            GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVE SRTLRLP HLHERL LIRNAKIRL
Sbjct: 301  GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 1356 EEKGITPSIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTR 1535
            EEKG+TPSI RIAESLN+S+KKVRNATEA SKVFSLDREAFPSLNGLPGET HSYIAD  
Sbjct: 361  EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420

Query: 1536 LENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGLSRER 1715
            LENNPWHGVD+W LK+EVN LI  TL+EREQ+I+RLYYGLD E LTWEDIS+RIGLSRER
Sbjct: 421  LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480

Query: 1716 VRQVGLVALEKLKHAARRKRLEAM 1787
            VRQVGLVALEKLKHAAR+K+LEAM
Sbjct: 481  VRQVGLVALEKLKHAARKKKLEAM 504


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  662 bits (1707), Expect = 0.0
 Identities = 352/505 (69%), Positives = 419/505 (82%), Gaps = 5/505 (0%)
 Frame = +3

Query: 288  MMATAAVIGLSVGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 467
            MMATAAVIGLS GK  LSSS YYSD+ +KL +V+DHG+  + T +TKNVI AKKS+++G 
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 468  SSPS-DRHAQAIKALKEHVNTYSAATADESLEK-LDFMVEGNFDMESSLEALLLLQKSML 641
            S PS +R++ +IKALKEHV+T SA++   +  K  D   E +  ++ S+EALLLLQKSML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 642  EKQWNLSFEQRRTLKEPKEGSCNNVEVTGSGVSARQRR--SMRKYVTNSDAVPPTRR-KP 812
            EKQWNLSFE+  +     + +   + VT SGVSARQRR  + RK    S  +  +   K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 813  IGLIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKSGLSLEDYKSKLKKRLGYDP 992
            +  + SPDLL NR++ YVKGV+S+E+L H EVV LS+ I++GLS ED+KS+LK+RLG +P
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 993  SEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGL 1172
            S++Q+A SLRIS A+L++KLI+CSLAREKLAMSNVRLVMSIAQKYDNMGAE+ADLVQ GL
Sbjct: 241  SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 1173 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIR 1352
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+ SRTLRLP HLHERL LIRNAKIR
Sbjct: 301  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360

Query: 1353 LEEKGITPSIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADT 1532
            LEEKG+TPSI RIAESLNMS++KVRNATEA SKVFSLDREAFPSLNGLPGET HSYIAD 
Sbjct: 361  LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 1533 RLENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGLSRE 1712
            R ENNPWHGVDEW LK EVN LI +TL+ERE++I+RLY+GLD+ECLTWEDIS+R+GLSRE
Sbjct: 421  RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480

Query: 1713 RVRQVGLVALEKLKHAARRKRLEAM 1787
            RVRQVGLVALEKLKHAAR++  EAM
Sbjct: 481  RVRQVGLVALEKLKHAARKRNTEAM 505


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  653 bits (1684), Expect = 0.0
 Identities = 345/508 (67%), Positives = 405/508 (79%), Gaps = 8/508 (1%)
 Frame = +3

Query: 288  MMATAAVIGLSVGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 467
            MM+TAAVIGLS GK  LSSS YYSD+ +KL    DH L  H   S KNVI+AKKS+ +  
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 468  SSPSDRHAQAIKALKEHVNTYSAATADES-----LEKLDFMVEGNFDMESSLEALLLLQK 632
            S  S R +Q+ K+LKEHV+     TAD S      E  + +   + D + S+E LLLLQK
Sbjct: 61   SCVSSRKSQSAKSLKEHVDI----TADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQK 116

Query: 633  SMLEKQWNLSFEQRRTLKEPKEGSCNNVEVTGSGVSARQRRS---MRKYVTNSDAVPPTR 803
            SMLEKQWNLS EQ  T     E     + +T SG SAR+RR     R    +S A P + 
Sbjct: 117  SMLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSA 176

Query: 804  RKPIGLIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKSGLSLEDYKSKLKKRLG 983
             KP+  I+ P+LL NR++ YVKGV+SEELLTHAEV+ LSKKI+ GL LE+ KS+LK+RLG
Sbjct: 177  AKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLG 236

Query: 984  YDPSEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQ 1163
             +PS+DQLA SL++S  +L++ LIECSLARE+LAMSNVRLVMSIAQ+YDN+GAE+ADLVQ
Sbjct: 237  CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296

Query: 1164 AGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNA 1343
             GLIGLLRGIEKFD SKG+KISTYVYWWIRQGVSRALVE SRTLRLPT+LHERLSLIRNA
Sbjct: 297  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNA 356

Query: 1344 KIRLEEKGITPSIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYI 1523
            K RLEEKGITPS+  IA SLNMS+KKVRNATEA+SK++SLDREAFPSLNGLPGETLHSYI
Sbjct: 357  KARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYI 416

Query: 1524 ADTRLENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGL 1703
            AD  LENNPWHGVD W LK+EVNNLI +TLR+RE++I+RLYYGLD ECLTWEDIS+RIGL
Sbjct: 417  ADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGL 476

Query: 1704 SRERVRQVGLVALEKLKHAARRKRLEAM 1787
            SRERVRQVGLVALEKLKHAAR+++L+AM
Sbjct: 477  SRERVRQVGLVALEKLKHAARKRQLDAM 504


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  645 bits (1663), Expect = 0.0
 Identities = 360/506 (71%), Positives = 409/506 (80%), Gaps = 6/506 (1%)
 Frame = +3

Query: 288  MMATAAVIGLSVGKTFLSSSIYYSDVADKLYS-VHDHGLIQHQTVSTKNVISAKKSTHFG 464
            MM TAAVIGLS G   L+SS +YSDVA+KL S V+D G   H +   KN+ISAKK +++ 
Sbjct: 1    MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 60

Query: 465  SSSPSDRHAQAIKALKEHVNTYSA-ATADESLEKLDFMVEGNFDMESSLEALLLLQKSML 641
             SS  +R  Q++KALKEHV + SA +TAD  L      VE   D E  +EA LLLQKSML
Sbjct: 61   PSS--NRSIQSMKALKEHVESASAPSTADPDLSSSSSEVE---DEEYLVEAFLLLQKSML 115

Query: 642  EKQWNLSFEQRRTLKEP---KEGSCNNVEVTGSGVSARQRR-SMRKYVTNSDAVPPTRRK 809
            EKQWNLSFE+    +E    K+      EVT SG SARQRR S RK V N  +    R  
Sbjct: 116  EKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSRVRAA 175

Query: 810  PIGLIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKSGLSLEDYKSKLKKRLGYD 989
             +G+        NR++ YVKGV+SEELLTHA+VV LS KIK+GL LED+KS+LK+R+G +
Sbjct: 176  -LGV-------ENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSE 227

Query: 990  PSEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAG 1169
            P+++Q+A SLR+S AEL++KLIECSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ G
Sbjct: 228  PTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 287

Query: 1170 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKI 1349
            LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE SRTLRLP+HLHERLSLIRNAKI
Sbjct: 288  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKI 347

Query: 1350 RLEEKGITPSIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIAD 1529
            RLEEKGITPSI RIAE LNMS+KKVRNATEA SKVFSLDREAFPSLNGLPGETLHSYIAD
Sbjct: 348  RLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIAD 407

Query: 1530 TRLENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGLSR 1709
             RLENNPWHGVDEW LK+EVN LI TTL ERE+DI+RLYYGLD ECLTWEDIS+RIGLSR
Sbjct: 408  VRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSR 467

Query: 1710 ERVRQVGLVALEKLKHAARRKRLEAM 1787
            ERVRQVGLVALEKLK+AAR+ R+EAM
Sbjct: 468  ERVRQVGLVALEKLKNAARKGRMEAM 493


>ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|222857613|gb|EEE95160.1|
            predicted protein [Populus trichocarpa]
          Length = 499

 Score =  642 bits (1656), Expect = 0.0
 Identities = 346/504 (68%), Positives = 408/504 (80%), Gaps = 4/504 (0%)
 Frame = +3

Query: 288  MMATAAVIGLSVGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 467
            MMATA+ IGL+ GK  LSSS Y+SD+ +KL +V+DHG+  +Q  +TK+VI AKKS+ +G 
Sbjct: 1    MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60

Query: 468  SSPSD-RHAQAIKALKEHVNTYSAA-TADESLEKLDFMVEGNFDMESSLEALLLLQKSML 641
            S PS  R+  + KALKE ++T SA+ T     + LD   E +  ++ S+EAL+LLQKSML
Sbjct: 61   SFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSML 120

Query: 642  EKQWNLSFEQRRTLKEPKEGSCNNVEVTGSGVSARQRR--SMRKYVTNSDAVPPTRRKPI 815
            EKQWNLSFE   +     + S   + VT SGVSARQRR  + RK    S  +        
Sbjct: 121  EKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKRKNQNQSKFMSD------ 174

Query: 816  GLIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKSGLSLEDYKSKLKKRLGYDPS 995
               +SP LL NR++ YVKGV+S+E+L H EVV LS+ I++GLSLED+KS LK+RLG +PS
Sbjct: 175  ---ISPGLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEPS 231

Query: 996  EDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLI 1175
            ++QLA SLRIS A+L+++LI+CSLAREKLAMSNVRLVMSIAQK DNMGAE+ADLVQAGLI
Sbjct: 232  DEQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGLI 291

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRL 1355
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE  RTLRLP HLHERL LIRNAKIRL
Sbjct: 292  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENPRTLRLPNHLHERLGLIRNAKIRL 351

Query: 1356 EEKGITPSIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTR 1535
            EEKG+TPSI RIAESLNMS++KVRNATEA SKVFSLDREAFPSLNGLPGET HSYIAD R
Sbjct: 352  EEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 411

Query: 1536 LENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGLSRER 1715
            LENNPWHGVDEW LK EVN LI + L+ERE++I+RLY+GLDKECLTWEDIS+R+GLSRER
Sbjct: 412  LENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDKECLTWEDISKRMGLSRER 471

Query: 1716 VRQVGLVALEKLKHAARRKRLEAM 1787
            VRQVGLVALEKLKHAAR+ +LEAM
Sbjct: 472  VRQVGLVALEKLKHAARKGKLEAM 495