BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014472
         (590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271463.2| PREDICTED: splicing factor U2af large subuni...   123   3e-26
emb|CBI17547.3| unnamed protein product [Vitis vinifera]              123   3e-26
emb|CAN68321.1| hypothetical protein VITISV_032193 [Vitis vinifera]   122   5e-26
gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 190...   120   1e-25
ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidops...   120   1e-25

>ref|XP_002271463.2| PREDICTED: splicing factor U2af large subunit B-like [Vitis
           vinifera]
          Length = 568

 Score =  123 bits (308), Expect = 3e-26
 Identities = 56/68 (82%), Positives = 62/68 (91%)
 Frame = -2

Query: 457 GNLVNVVIPRPNANGEPSPGVGKVFLEYADTDGASKARTGMNGRKFGGNPVVAVFYPEDK 278
           GNLVNV IPRP  NGEP+PG+GKVFLEYAD DGA+KARTG+NGRKF GN VVAVFYPE+K
Sbjct: 501 GNLVNVAIPRPKPNGEPTPGLGKVFLEYADIDGATKARTGLNGRKFDGNQVVAVFYPENK 560

Query: 277 FSQGDYDG 254
           FSQG+YDG
Sbjct: 561 FSQGEYDG 568


>emb|CBI17547.3| unnamed protein product [Vitis vinifera]
          Length = 393

 Score =  123 bits (308), Expect = 3e-26
 Identities = 56/68 (82%), Positives = 62/68 (91%)
 Frame = -2

Query: 457 GNLVNVVIPRPNANGEPSPGVGKVFLEYADTDGASKARTGMNGRKFGGNPVVAVFYPEDK 278
           GNLVNV IPRP  NGEP+PG+GKVFLEYAD DGA+KARTG+NGRKF GN VVAVFYPE+K
Sbjct: 326 GNLVNVAIPRPKPNGEPTPGLGKVFLEYADIDGATKARTGLNGRKFDGNQVVAVFYPENK 385

Query: 277 FSQGDYDG 254
           FSQG+YDG
Sbjct: 386 FSQGEYDG 393


>emb|CAN68321.1| hypothetical protein VITISV_032193 [Vitis vinifera]
          Length = 565

 Score =  122 bits (306), Expect = 5e-26
 Identities = 56/68 (82%), Positives = 61/68 (89%)
 Frame = -2

Query: 457 GNLVNVVIPRPNANGEPSPGVGKVFLEYADTDGASKARTGMNGRKFGGNPVVAVFYPEDK 278
           GNLVNV IPRP  NGEP+PG+GKVFLEYAD DGA KARTG+NGRKF GN VVAVFYPE+K
Sbjct: 498 GNLVNVAIPRPKPNGEPTPGLGKVFLEYADIDGAXKARTGLNGRKFDGNQVVAVFYPENK 557

Query: 277 FSQGDYDG 254
           FSQG+YDG
Sbjct: 558 FSQGEYDG 565


>gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis
           thaliana]
          Length = 568

 Score =  120 bits (302), Expect = 1e-25
 Identities = 54/67 (80%), Positives = 63/67 (94%)
 Frame = -2

Query: 457 GNLVNVVIPRPNANGEPSPGVGKVFLEYADTDGASKARTGMNGRKFGGNPVVAVFYPEDK 278
           GNLVNVVIPRPN + +P+PGVGKVFLEYAD DG+SKAR+GMNGRKFGGN VVAV+YPEDK
Sbjct: 501 GNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDK 560

Query: 277 FSQGDYD 257
           ++QGDY+
Sbjct: 561 YAQGDYE 567


>ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidopsis thaliana]
           gi|209572798|sp|Q8L716.2|U2A2B_ARATH RecName:
           Full=Splicing factor U2af large subunit B; AltName:
           Full=U2 auxiliary factor 65 kDa subunit B; AltName:
           Full=U2 small nuclear ribonucleoprotein auxiliary factor
           large subunit B; Short=U2 snRNP auxiliary factor large
           subunit B gi|332195625|gb|AEE33746.1| Splicing factor
           U2af large subunit B [Arabidopsis thaliana]
          Length = 589

 Score =  120 bits (302), Expect = 1e-25
 Identities = 54/67 (80%), Positives = 63/67 (94%)
 Frame = -2

Query: 457 GNLVNVVIPRPNANGEPSPGVGKVFLEYADTDGASKARTGMNGRKFGGNPVVAVFYPEDK 278
           GNLVNVVIPRPN + +P+PGVGKVFLEYAD DG+SKAR+GMNGRKFGGN VVAV+YPEDK
Sbjct: 522 GNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDK 581

Query: 277 FSQGDYD 257
           ++QGDY+
Sbjct: 582 YAQGDYE 588