BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014463
         (752 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   256   3e-66
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   253   3e-65
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,...   248   7e-64
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...   235   9e-60
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar...   233   3e-59

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  256 bits (655), Expect = 3e-66
 Identities = 124/185 (67%), Positives = 149/185 (80%), Gaps = 2/185 (1%)
 Frame = +2

Query: 155 TNFQEEQNPTPNDSLSNQLKPISLTLLTDTNSPS--LLSKPKSTWVNPSKPKRSVLSLQR 328
           T+   EQ    N SLS QLKP+S T+LT  +S    L+SKPKSTW+NP+KPK SVLSLQR
Sbjct: 61  TSSDSEQTNHQNPSLSEQLKPLSKTILTRDHSGQTHLVSKPKSTWINPTKPKPSVLSLQR 120

Query: 329 HKKDTYTQNPKLNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTKENALLILNSLRPWQ 508
           HK+  Y+ NP++ DL++F+KK+N  + S E+EFLAVLE IPHPPT++NALL+LNSL+PW 
Sbjct: 121 HKRHNYSYNPQIRDLKLFAKKINESESSDESEFLAVLEQIPHPPTRDNALLLLNSLKPWP 180

Query: 509 KTLCFFTWLKNQNLFPVETIFYNVVMKSLRFGRQFDVIEELANEMIENNIELDNITYSTI 688
           KT  FF W+K QNLFP+ETIFYNV MKSLRFGRQF +IEELANEMI   +ELDNITYSTI
Sbjct: 181 KTYLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTI 240

Query: 689 ITCAK 703
           ITCAK
Sbjct: 241 ITCAK 245


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
           gi|449521148|ref|XP_004167592.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  253 bits (646), Expect = 3e-65
 Identities = 124/174 (71%), Positives = 144/174 (82%), Gaps = 2/174 (1%)
 Frame = +2

Query: 188 NDSLSNQLKPISLTLLTDT--NSPSLLSKPKSTWVNPSKPKRSVLSLQRHKKDTYTQNPK 361
           N SLS QLK +S T L++   +   LLSKPKSTWVNP+KPKRSVLSLQR K+ +Y+ NPK
Sbjct: 58  NPSLSEQLKNLSTTTLSNAPNDETRLLSKPKSTWVNPTKPKRSVLSLQRQKRSSYSYNPK 117

Query: 362 LNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTKENALLILNSLRPWQKTLCFFTWLKN 541
           + DL+ F+ KLNACD S +  F+A LE+IPHPPTKENALLILNSLRPWQKT  FF W+K+
Sbjct: 118 MRDLKSFAHKLNACDSSDDASFIAALEEIPHPPTKENALLILNSLRPWQKTHLFFNWIKS 177

Query: 542 QNLFPVETIFYNVVMKSLRFGRQFDVIEELANEMIENNIELDNITYSTIITCAK 703
           QNLFP+ETIFYNV MKSLR+GRQF +IE+LANEMI   IELDNITYSTIITCAK
Sbjct: 178 QNLFPMETIFYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTIITCAK 231


>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 677

 Score =  248 bits (634), Expect = 7e-64
 Identities = 138/244 (56%), Positives = 168/244 (68%), Gaps = 15/244 (6%)
 Frame = +2

Query: 17  MAASSILSTSILDL---HNSKNKNKPIFHFSSPFXXXXXXXXXXXXXX------QTNFQE 169
           MAA+S+ +     L   H+S  K   +F  SSP                     +T+   
Sbjct: 1   MAAASLSAAPDFHLTITHHSDKKKPILFTSSSPITITHNNNPYRRRLTISCNSRKTSKHL 60

Query: 170 EQNPTP-NDSLSNQLKPISLTLL-----TDTNSPSLLSKPKSTWVNPSKPKRSVLSLQRH 331
            ++P P N SLS+QLKP+S T L     T T   SLLSKP STWVNP+KPKRSVLSLQR 
Sbjct: 61  SESPNPKNPSLSDQLKPLSSTTLSTTTTTTTTKHSLLSKPNSTWVNPTKPKRSVLSLQRQ 120

Query: 332 KKDTYTQNPKLNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTKENALLILNSLRPWQK 511
           K+  Y+ NPK+ +LR+F++KLN CD S E+ FL++LE IP+P T+ENALLILNSLRPWQK
Sbjct: 121 KRSPYSLNPKVKELRLFAQKLNDCD-STESSFLSLLEQIPYPLTRENALLILNSLRPWQK 179

Query: 512 TLCFFTWLKNQNLFPVETIFYNVVMKSLRFGRQFDVIEELANEMIENNIELDNITYSTII 691
              FF W+K QN FPVETIFYNV MKSLRFGRQF++I++LANEM+ N IELDNITYSTII
Sbjct: 180 AHLFFNWIKTQNSFPVETIFYNVTMKSLRFGRQFELIDKLANEMVSNEIELDNITYSTII 239

Query: 692 TCAK 703
           TCAK
Sbjct: 240 TCAK 243


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309232|gb|EFH39656.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 711

 Score =  235 bits (599), Expect = 9e-60
 Identities = 115/188 (61%), Positives = 149/188 (79%), Gaps = 3/188 (1%)
 Frame = +2

Query: 164 QEEQNPTPNDSLSNQLKPISLTLLTDTNSPSLLSKPKSTWVNPSKPKRSVLSLQRHKKDT 343
           +EE   T   SLS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSLQR K+  
Sbjct: 54  EEEPITTKTPSLSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSA 112

Query: 344 YTQNPKLNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTKENALLILNSLRPWQKTLCF 523
           Y+ NP++ DLR F++KLN+ + + ++EFL++L++IPHPP ++NALL+LNSLR WQKT  F
Sbjct: 113 YSYNPQIKDLRAFAQKLNSSNFTEKSEFLSLLDEIPHPPDRDNALLVLNSLREWQKTHTF 172

Query: 524 FTWLKNQNLFPVETIFYNVVMKSLRFGRQFDVIEELANEMIENNIELDNITYSTIITCAK 703
           F W+K++NLFP+ETIFYNV MKSLRFGRQF +IEE+A EM+++ +ELDNITYSTIITCAK
Sbjct: 173 FNWVKSKNLFPMETIFYNVTMKSLRFGRQFYLIEEMALEMVKDGVELDNITYSTIITCAK 232

Query: 704 ---IYGKA 718
               Y KA
Sbjct: 233 RCNFYDKA 240


>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
           gi|8885599|dbj|BAA97529.1| unnamed protein product
           [Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 711

 Score =  233 bits (594), Expect = 3e-59
 Identities = 114/188 (60%), Positives = 148/188 (78%), Gaps = 3/188 (1%)
 Frame = +2

Query: 164 QEEQNPTPNDSLSNQLKPISLTLLTDTNSPSLLSKPKSTWVNPSKPKRSVLSLQRHKKDT 343
           +EE   T   SLS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSLQR K+  
Sbjct: 54  EEEPITTKTPSLSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSA 112

Query: 344 YTQNPKLNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTKENALLILNSLRPWQKTLCF 523
           Y+ NP++ DLR F+ KLN+   + ++EFL++L++IPHPP ++NALL+LNSLR WQKT  F
Sbjct: 113 YSYNPQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTF 172

Query: 524 FTWLKNQNLFPVETIFYNVVMKSLRFGRQFDVIEELANEMIENNIELDNITYSTIITCAK 703
           F W+K+++LFP+ETIFYNV MKSLRFGRQF +IEE+A EM+++ +ELDNITYSTIITCAK
Sbjct: 173 FNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAK 232

Query: 704 ---IYGKA 718
              +Y KA
Sbjct: 233 RCNLYNKA 240