BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014371
         (1297 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V...   562   e-158
ref|XP_002520343.1| replication factor C / DNA polymerase III ga...   546   e-153
ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li...   545   e-153
ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-li...   545   e-153
ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|2...   543   e-152

>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
            gi|302141794|emb|CBI18997.3| unnamed protein product
            [Vitis vinifera]
          Length = 360

 Score =  562 bits (1449), Expect = e-158
 Identities = 284/324 (87%), Positives = 300/324 (92%)
 Frame = -3

Query: 1289 IIMQPSEASATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTST 1110
            ++  P +  ATPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN+LPHLLLYGPPGTGKTST
Sbjct: 27   VVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 86

Query: 1109 ILAVARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 930
            ILAVARKLYG  +HNMILELNASDDRGIDVVRQQIQDFASTQSFSFG K+SVKLVLLDEA
Sbjct: 87   ILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEA 146

Query: 929  DAMTKDAQFALRRVIEKYTKSTRFSLICNHVNKIIPALQSRCTRFRFAPLDATHVTERLK 750
            DAMTKDAQFALRRVIEKYTK+TRF+LICNHVNKIIPALQSRCTRFRFAPLDA HVTERLK
Sbjct: 147  DAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLK 206

Query: 749  HVIEAEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGNPMPKDI 570
            HVI AE L+V ESGL ALVRLSSGDMRKALNILQSTHMAS  ITEEAVYLCTGNP+PKDI
Sbjct: 207  HVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 266

Query: 569  EQISFWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNLINDLAD 390
            EQIS+WLLNESF      ISE+KM KGLALVD+VREVTMF+FKIKMPSDVRV LINDLAD
Sbjct: 267  EQISYWLLNESFAASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLAD 326

Query: 389  IEYRLTFGSNDKLQLGSLIASFTK 318
            IEYRL+FG NDKLQLGSLIASFT+
Sbjct: 327  IEYRLSFGCNDKLQLGSLIASFTR 350


>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540562|gb|EEF42129.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 360

 Score =  546 bits (1407), Expect = e-153
 Identities = 273/317 (86%), Positives = 295/317 (93%)
 Frame = -3

Query: 1271 EASATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVAR 1092
            +  ATPWVEKYRPQSLADVAAHRDIVDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVAR
Sbjct: 33   DTKATPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVAR 92

Query: 1091 KLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 912
            KLYG  YHNMILELNASDDRGIDVVRQQIQDFASTQSFSF  K++VKLVLLDEADAMTKD
Sbjct: 93   KLYGVQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKD 152

Query: 911  AQFALRRVIEKYTKSTRFSLICNHVNKIIPALQSRCTRFRFAPLDATHVTERLKHVIEAE 732
            AQFALRRVIEKYTK+TRF+LICNHVNKIIPALQSRCTRFRFAPLD  HVT+RLKHVIEAE
Sbjct: 153  AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAE 212

Query: 731  GLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGNPMPKDIEQISFW 552
            GL+V E GL A+VRLS+GDMRKALNILQSTHMAS  ITEEAV+LCTGNP+PKDI+QIS+W
Sbjct: 213  GLDVPEPGLAAVVRLSNGDMRKALNILQSTHMASQQITEEAVHLCTGNPLPKDIQQISYW 272

Query: 551  LLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNLINDLADIEYRLT 372
            LLNESF    + ISE+K  KGLALVDIVREVTMF+FKIKMPSDVRV LIND+ADIEYRL+
Sbjct: 273  LLNESFAESFKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLS 332

Query: 371  FGSNDKLQLGSLIASFT 321
            FG +DKLQLGSL+ASFT
Sbjct: 333  FGCSDKLQLGSLVASFT 349


>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
            gi|449499057|ref|XP_004160708.1| PREDICTED: replication
            factor C subunit 5-like [Cucumis sativus]
          Length = 363

 Score =  545 bits (1405), Expect = e-153
 Identities = 274/317 (86%), Positives = 295/317 (93%)
 Frame = -3

Query: 1271 EASATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVAR 1092
            E  A PWVEK+RP+SLADVAAHRDIVDTID+LTSEN+LPHLLLYGPPGTGKTSTILAVAR
Sbjct: 36   EGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVAR 95

Query: 1091 KLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 912
            KLYG +YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG KASVKLVLLDEADAMTKD
Sbjct: 96   KLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKD 155

Query: 911  AQFALRRVIEKYTKSTRFSLICNHVNKIIPALQSRCTRFRFAPLDATHVTERLKHVIEAE 732
            AQFALRRVIEKYTK+TRF+LICNHVNKIIPALQSRCTRFRFAPLD  HVTERL++VIEAE
Sbjct: 156  AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAE 215

Query: 731  GLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGNPMPKDIEQISFW 552
             L+V E GL ALVRL +GDMRKALNILQSTHMAS HITEEAVYLCTGNPMPKDIEQISFW
Sbjct: 216  RLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFW 275

Query: 551  LLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNLINDLADIEYRLT 372
            LLNE F+   + ISE+K  KGLALVDIVREVT+F+FKI+MPS++RV LINDLADIEYR+T
Sbjct: 276  LLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMT 335

Query: 371  FGSNDKLQLGSLIASFT 321
            FG NDKLQLGSLI+SFT
Sbjct: 336  FGCNDKLQLGSLISSFT 352


>ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 361

 Score =  545 bits (1405), Expect = e-153
 Identities = 274/320 (85%), Positives = 294/320 (91%)
 Frame = -3

Query: 1277 PSEASATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAV 1098
            P+   A PWVEKYRPQSL DVAAHRDIVDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAV
Sbjct: 32   PAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAV 91

Query: 1097 ARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 918
            ARKLYG+ Y NMILELNASDDRGIDVVRQQIQDFASTQS SFGVK+SVKLVLLDEADAMT
Sbjct: 92   ARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMT 151

Query: 917  KDAQFALRRVIEKYTKSTRFSLICNHVNKIIPALQSRCTRFRFAPLDATHVTERLKHVIE 738
            KDAQFALRRVIEKYTKSTRF+LICNHVNKIIPALQSRCTRFRFAPLDA HVTERLKHVI+
Sbjct: 152  KDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIK 211

Query: 737  AEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGNPMPKDIEQIS 558
            AEGL+V++SGL A VRLS+GDMRKALNILQSTHMAS  ITEEAVYLCTGNP+PKDIE IS
Sbjct: 212  AEGLDVEDSGLAAFVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIELIS 271

Query: 557  FWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNLINDLADIEYR 378
            +WLLNE F    + I EMK  KGLAL+DIVREVTMF+FKIKMPS VRV L+NDLADIEYR
Sbjct: 272  YWLLNEQFADSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYR 331

Query: 377  LTFGSNDKLQLGSLIASFTK 318
            L+FG NDKLQLGS+IASFT+
Sbjct: 332  LSFGCNDKLQLGSVIASFTR 351


>ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|222843952|gb|EEE81499.1|
            predicted protein [Populus trichocarpa]
          Length = 363

 Score =  543 bits (1400), Expect = e-152
 Identities = 275/320 (85%), Positives = 293/320 (91%)
 Frame = -3

Query: 1277 PSEASATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAV 1098
            P    ATPWVEKYRPQSLADVAAHRDI+DTIDRLTSEN+LPHLLLYGPPGTGKTSTILAV
Sbjct: 34   PPGGKATPWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 93

Query: 1097 ARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 918
            ARKLYGA YHNMILELNASDDRGIDVVR+QIQDFASTQSFSFG KASVKLVLLDEADAMT
Sbjct: 94   ARKLYGAQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMT 153

Query: 917  KDAQFALRRVIEKYTKSTRFSLICNHVNKIIPALQSRCTRFRFAPLDATHVTERLKHVIE 738
            KDAQFALRRVIEKYTK+TRF+LICNHVNKIIPALQSRCTRFRFAPLD  HV ERLKHVIE
Sbjct: 154  KDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIE 213

Query: 737  AEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGNPMPKDIEQIS 558
            AEGL+V ESGL AL  LS+GDMRKALNILQSTHMAS  ITEE VYLCTGNP+P+D++QI+
Sbjct: 214  AEGLDVPESGLEALKCLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPQDVQQIT 273

Query: 557  FWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNLINDLADIEYR 378
             WLLNESF    + ISE+K  KGLALVDIVREVTMF+FKIKM SD+RV LINDLADIEYR
Sbjct: 274  HWLLNESFAESYKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDLADIEYR 333

Query: 377  LTFGSNDKLQLGSLIASFTK 318
            L+FG NDKLQLGSLIASFT+
Sbjct: 334  LSFGCNDKLQLGSLIASFTR 353