BLASTX nr result

ID: Coptis23_contig00014361 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014361
         (610 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303737.1| predicted protein [Populus trichocarpa] gi|2...    94   3e-17
ref|XP_002273940.1| PREDICTED: uncharacterized protein LOC100255...    90   3e-16
ref|XP_002299363.1| predicted protein [Populus trichocarpa] gi|2...    90   4e-16
ref|XP_002512700.1| conserved hypothetical protein [Ricinus comm...    89   6e-16
ref|XP_003577507.1| PREDICTED: uncharacterized protein LOC100827...    58   1e-06

>ref|XP_002303737.1| predicted protein [Populus trichocarpa] gi|222841169|gb|EEE78716.1|
           predicted protein [Populus trichocarpa]
          Length = 272

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 50/89 (56%), Positives = 62/89 (69%)
 Frame = +2

Query: 344 MKFLNLQTIIPAYWCLGNLACLHQADRELIRVRPRRVVKLIKWDGVVNIYHQPINASELM 523
           ++FLNLQ +IP  WC  NL     +  +L    P   +KLIK DG+V IY +P+  SELM
Sbjct: 3   IRFLNLQ-MIP--WCFHNLMGNPTSCLQLQSEPPAGTIKLIKSDGLVKIYDRPVYVSELM 59

Query: 524 LQFPKHLVCHSHSFYIGQKIPPLSPNDKL 610
           ++FPKHLVCHS SFYIGQKIP LS ND+L
Sbjct: 60  VEFPKHLVCHSDSFYIGQKIPALSENDQL 88


>ref|XP_002273940.1| PREDICTED: uncharacterized protein LOC100255664 [Vitis vinifera]
          Length = 272

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 48/90 (53%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
 Frame = +2

Query: 344 MKFLNLQTIIPAYWCLGN-LACLHQADRELIRVRPRRVVKLIKWDGVVNIYHQPINASEL 520
           +KFLNLQTI   +  + N ++C+H              +KLIK DG+V IY +PI+ SEL
Sbjct: 3   IKFLNLQTIPWCFHLMSNPVSCMHLQPEA---PEGSGTIKLIKSDGIVKIYDRPIHVSEL 59

Query: 521 MLQFPKHLVCHSHSFYIGQKIPPLSPNDKL 610
           ML+FPKH VCHS SFYIGQKIP LS +D+L
Sbjct: 60  MLEFPKHRVCHSDSFYIGQKIPALSEDDEL 89


>ref|XP_002299363.1| predicted protein [Populus trichocarpa] gi|222846621|gb|EEE84168.1|
           predicted protein [Populus trichocarpa]
          Length = 267

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
 Frame = +2

Query: 344 MKFLNLQTIIPAYWCLGN-LACLHQADRELIRVRPRRVVKLIKWDGVVNIYHQPINASEL 520
           ++FLNLQ I   +  +GN ++CL     ++    P   +KLI+ DG+V IY +PI  SEL
Sbjct: 3   IRFLNLQIIPWCFHLMGNPISCL-----QIQSEPPAGTIKLIRSDGLVKIYDRPIYVSEL 57

Query: 521 MLQFPKHLVCHSHSFYIGQKIPPLSPNDKL 610
           M++FPKHLVCHS SFYIGQKIP LS ND L
Sbjct: 58  MVEFPKHLVCHSDSFYIGQKIPALSENDLL 87


>ref|XP_002512700.1| conserved hypothetical protein [Ricinus communis]
           gi|223548661|gb|EEF50152.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 274

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 52/96 (54%), Positives = 65/96 (67%), Gaps = 4/96 (4%)
 Frame = +2

Query: 335 MGRMKFLNLQTIIPAYWCL----GNLACLHQADRELIRVRPRRVVKLIKWDGVVNIYHQP 502
           MGR KF+NLQ +IP  WCL     +++C+H          P   VKLIK DG+V IY +P
Sbjct: 1   MGR-KFMNLQ-MIP--WCLQLMGNHISCVHIRPEP-----PAGTVKLIKSDGLVKIYDRP 51

Query: 503 INASELMLQFPKHLVCHSHSFYIGQKIPPLSPNDKL 610
           I+ SEL+ ++PKHLVC S SFYIGQKIP LS ND+L
Sbjct: 52  IHVSELLHEYPKHLVCRSDSFYIGQKIPALSENDQL 87


>ref|XP_003577507.1| PREDICTED: uncharacterized protein LOC100827820 [Brachypodium
           distachyon]
          Length = 291

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 29/66 (43%), Positives = 42/66 (63%)
 Frame = +2

Query: 413 QADRELIRVRPRRVVKLIKWDGVVNIYHQPINASELMLQFPKHLVCHSHSFYIGQKIPPL 592
           Q D+E   ++ +  V+L+  DG V  Y +P+ A ELM Q P HLVC S +  IG+KIP +
Sbjct: 41  QEDKE---IKLQEAVRLVGCDGRVLTYRRPVTARELMQQHPCHLVCRSDALLIGEKIPAV 97

Query: 593 SPNDKL 610
           SP ++L
Sbjct: 98  SPGEEL 103


Top