BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014356
         (1305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]   341   3e-91
ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chlorop...   338   2e-90
ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|2...   327   5e-87
ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus ...   322   2e-85
sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, ch...   308   2e-81

>emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]
          Length = 306

 Score =  341 bits (874), Expect = 3e-91
 Identities = 171/215 (79%), Positives = 190/215 (88%)
 Frame = -2

Query: 1109 IHAQLSAIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTASTLTRAE 930
            + + L AIPILSF GEK+GET L+LKSAP +TARAVVHRGIITD QN RRGTASTLTR E
Sbjct: 46   VRSDLVAIPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGE 105

Query: 929  VRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEKRLAISTALAS 750
            VRGGGKKPYPQKKTGRARRGSQRTPLR           +DWSIKINRKEKRLAISTA++S
Sbjct: 106  VRGGGKKPYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSS 165

Query: 749  ASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPKEKSMFLLNEVSDNVKLSSRNIGTVK 570
            A+VNTIVVEDF DKFDKPKTKEFI A+KRWG+DPKEKSMFL+ EVSDNV+LSSRNIGT+K
Sbjct: 166  AAVNTIVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLK 225

Query: 569  MLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLD 465
            MLTPRTLNLFDILN+DK+VLT+ TVDYLNRMY ++
Sbjct: 226  MLTPRTLNLFDILNSDKLVLTQETVDYLNRMYAVE 260


>ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Cucumis
            sativus] gi|449496602|ref|XP_004160176.1| PREDICTED: 50S
            ribosomal protein L4, chloroplastic-like [Cucumis
            sativus]
          Length = 288

 Score =  338 bits (866), Expect = 2e-90
 Identities = 167/221 (75%), Positives = 192/221 (86%)
 Frame = -2

Query: 1124 THSQKIHAQLSAIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTAST 945
            T +  I ++L+ +P+LSF G+K+GETYLDLKSAPPETARAVVHR IITDQQN RRGTAST
Sbjct: 42   TKTLSISSELATLPVLSFTGQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTAST 101

Query: 944  LTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEKRLAIS 765
            LTRAEV GGGKKPY QKKTGRARRGS RTPLR           +DWSIKINRKEK+LAIS
Sbjct: 102  LTRAEVSGGGKKPYKQKKTGRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAIS 161

Query: 764  TALASASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPKEKSMFLLNEVSDNVKLSSRN 585
            TA+ASA+VNTIVVE+F DKF+KPKTKEFI ALKRWG+DPKEKS+FL+ EVSDNV+LSSRN
Sbjct: 162  TAVASAAVNTIVVEEFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRN 221

Query: 584  IGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLDY 462
            IGT+K+LTPRTLNLFDIL++DK+VLT T VDYLN  YG++Y
Sbjct: 222  IGTLKLLTPRTLNLFDILDSDKLVLTPTAVDYLNERYGINY 262


>ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|222855445|gb|EEE92992.1|
            predicted protein [Populus trichocarpa]
          Length = 279

 Score =  327 bits (837), Expect = 5e-87
 Identities = 167/222 (75%), Positives = 187/222 (84%), Gaps = 3/222 (1%)
 Frame = -2

Query: 1118 SQKIHAQLSAIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTASTLT 939
            S  I  Q++ +PILSF GEKIGETYLDLKSAPPETARAVVHRGIITDQQN RRGTASTLT
Sbjct: 40   SLSISCQVATLPILSFTGEKIGETYLDLKSAPPETARAVVHRGIITDQQNKRRGTASTLT 99

Query: 938  RAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEKRLAISTA 759
            R EVRGGG+KPYPQKKTGRARRGS R+PLR           +DWSIKINRKEKRLA+STA
Sbjct: 100  RGEVRGGGRKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRDWSIKINRKEKRLAMSTA 159

Query: 758  LASA---SVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPKEKSMFLLNEVSDNVKLSSR 588
            L+SA   S + I VE+F DKF+KPKTKEFIEA+ RWGLDPKEK MFL+ +VSDNV LSSR
Sbjct: 160  LSSAASESESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPKEKVMFLMMDVSDNVGLSSR 219

Query: 587  NIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLDY 462
            NIGT++MLTPRTLNLFDILN+DK+VLT  TVDYLN  YG+D+
Sbjct: 220  NIGTLRMLTPRTLNLFDILNSDKLVLTPDTVDYLNGRYGVDF 261


>ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis]
            gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4,
            putative [Ricinus communis]
          Length = 283

 Score =  322 bits (824), Expect = 2e-85
 Identities = 162/218 (74%), Positives = 184/218 (84%)
 Frame = -2

Query: 1118 SQKIHAQLSAIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTASTLT 939
            S  I  Q+S +PILSF GEKIGETYLDLK+APP+TARAVVHR IITDQQN RRGTASTLT
Sbjct: 44   SLSISCQVSTLPILSFTGEKIGETYLDLKTAPPDTARAVVHRAIITDQQNKRRGTASTLT 103

Query: 938  RAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEKRLAISTA 759
            RAEVRGGGKKPY QKKTGRARRGS RTPLR           +DWSIKIN+KEKRLAISTA
Sbjct: 104  RAEVRGGGKKPYQQKKTGRARRGSSRTPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTA 163

Query: 758  LASASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPKEKSMFLLNEVSDNVKLSSRNIG 579
            L SA+ + + VE+F DKF+KPKTK+FIEA+KRWGLDPKEK MFL+ +V+D+V LSSRNIG
Sbjct: 164  LCSATESMLCVEEFGDKFEKPKTKDFIEAMKRWGLDPKEKVMFLMMDVADSVGLSSRNIG 223

Query: 578  TVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLD 465
            T++MLTPRTLNLFDILN+DK+VLT   VDYLN  YG+D
Sbjct: 224  TLRMLTPRTLNLFDILNSDKLVLTPDAVDYLNGRYGVD 261


>sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, chloroplastic; AltName:
            Full=CL4; AltName: Full=R-protein L4; Flags: Precursor
            gi|3298439|dbj|BAA31510.1| chloroplast ribosomal protein
            L4 [Nicotiana tabacum]
          Length = 282

 Score =  308 bits (789), Expect = 2e-81
 Identities = 153/213 (71%), Positives = 183/213 (85%)
 Frame = -2

Query: 1109 IHAQLSAIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTASTLTRAE 930
            I ++++ IPILSF+G ++G T L+LKSAP +TARAVVHRG+ TD +N RRGTASTLTR+E
Sbjct: 41   IRSEVATIPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSE 100

Query: 929  VRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEKRLAISTALAS 750
            VRGGG KPYPQKKTGRARRGS RTPLR           KDWS+KIN+KEKRLAISTAL+S
Sbjct: 101  VRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSS 160

Query: 749  ASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPKEKSMFLLNEVSDNVKLSSRNIGTVK 570
            AS NTIVVE+F DKF+KPKTKEFI+ ++RWGLDPKEKS+FL+ +VSDNV LSSRNIGT+K
Sbjct: 161  ASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLK 220

Query: 569  MLTPRTLNLFDILNADKVVLTKTTVDYLNRMYG 471
            MLTPRTLNLFDIL+++K+VLTK+ VD+LN  YG
Sbjct: 221  MLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253