BLASTX nr result
ID: Coptis23_contig00014288
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00014288
(2123 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28171.3| unnamed protein product [Vitis vinifera] 414 e-113
emb|CAN63504.1| hypothetical protein VITISV_011679 [Vitis vinifera] 394 e-107
ref|XP_002524463.1| nucleic acid binding protein, putative [Rici... 382 e-103
ref|XP_003550828.1| PREDICTED: zinc finger CCCH domain-containin... 323 9e-86
ref|XP_003525663.1| PREDICTED: zinc finger CCCH domain-containin... 323 1e-85
>emb|CBI28171.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 414 bits (1064), Expect = e-113
Identities = 240/540 (44%), Positives = 324/540 (60%), Gaps = 6/540 (1%)
Frame = -1
Query: 2009 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1830
M+DEL KRNTDCVYFLASPLTCKKG +CEYRHSE ARLNPRDCWYWL+G+CLNP CAFRH
Sbjct: 1 MEDELQKRNTDCVYFLASPLTCKKGMDCEYRHSEGARLNPRDCWYWLSGSCLNPACAFRH 60
Query: 1829 PPLEGRSETTLEPESLPAQASVPVIKSNVPCYFYFSSFCNKGENCSFLHGSNINSGQSSK 1650
PPL+G E + EP +L +SVPV K+N PCYFY++ FCNKGE CSFLHG + ++G +
Sbjct: 61 PPLDGHIEASSEPVTLSHHSSVPVNKTNTPCYFYYNGFCNKGERCSFLHGPD-STGTETG 119
Query: 1649 SASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYNNGL 1470
+ + +E VT+I Q K + Q V+ N
Sbjct: 120 PTLIGRRPNSVETATVTAIE----------------------TQFQPKEDLQKLVFKNAF 157
Query: 1469 QKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPVPANQSPLCAEQNSDGQFDDHIDPEER 1293
++S SP+I++ ++ ++S+ LLPAEG ++S L +Q+S+ Q D I+PEER
Sbjct: 158 EQSSSPQISMSEYEEAAAVRSDSLLPAEGFNQ----SRSLLSTDQSSEEQVDGPIEPEER 213
Query: 1292 WESSPGFDVLVDDGSENLGYEDDPEYLLVQKRESRVLHEQLLQYDYEDSVGYDPLEFGDS 1113
WESSPGFDVLVD+ SENL YED+PEYLL + E R L+ Q L YD+ED V YD L + ++
Sbjct: 214 WESSPGFDVLVDNISENLVYEDEPEYLLALEGEGRELNGQFLGYDFEDPVEYD-LMYPEA 272
Query: 1112 GILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDPMGLPNRQNFPREVDLSVRNGVD 933
ILY+H +Y+S+D L+N++ +D V+ +P SRE +LDP+ R+NFP E+ ++ R+G+D
Sbjct: 273 EILYDHRIYDSFDCLDNEHSSDHVRNIPGCSRERILDPILPRKRKNFPVELAVTGRSGLD 332
Query: 932 LRNQL-----XXXXXXXXXXXRGSLSHLKEAGQERPGRRHKRQTVHGRLTSEVASNRIGG 768
LR++L R S L +ER R Q + GR SEV N IG
Sbjct: 333 LRDRLRKRRVTDGHTVTRFSRRHDSSCLIGRTRERRRRHGMDQQLQGRSASEVRKNIIGM 392
Query: 767 RNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQNARSP 588
+E++ S + +G R++ S+ SE+SR + + R
Sbjct: 393 LSENETLSNRGNKQGWVRRSRLPKSRQHYKEKGHSQRQHIS---SEDSRKPVSRE--RIS 447
Query: 587 KESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKDKRRL 408
TTFTGPK+LA+IKEEKRK E G + T S +F+GPKPL EILKDKR+L
Sbjct: 448 TREYTTFTGPKSLAQIKEEKRKAEENGEGFGKMGYSSNTPSADFQGPKPLSEILKDKRKL 507
>emb|CAN63504.1| hypothetical protein VITISV_011679 [Vitis vinifera]
Length = 554
Score = 394 bits (1012), Expect = e-107
Identities = 243/568 (42%), Positives = 327/568 (57%), Gaps = 32/568 (5%)
Frame = -1
Query: 2009 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1830
M+DEL KRNTDCVYFLASPLTCKKG +CEYRHSE ARLNPRDCWYWL+G+CLNP CAFRH
Sbjct: 1 MEDELQKRNTDCVYFLASPLTCKKGMDCEYRHSEGARLNPRDCWYWLSGSCLNPACAFRH 60
Query: 1829 P-----------------------PLEGRSETTLEPESLPAQASVPVIKSNVPCYFYFSS 1719
P PL+G E + EP +L +SVPV K+N PCYFY++
Sbjct: 61 PVRVMLKRIQRDSRSGLLEEKVHLPLDGHIEASSEPVTLSHHSSVPVNKTNTPCYFYYNG 120
Query: 1718 FCNKGENCSFLHG--SNINSGQSSKSASLVANVHPLENKVVTSI-NGVTAAIELPHDESQ 1548
FCNKGE CSFLHG S+ + +S K+AS V ++ P EN + G T P+
Sbjct: 121 FCNKGERCSFLHGPDSSAPAWKSLKTASEVNDMRPPENNXIAGTETGPTLIGRRPNSVET 180
Query: 1547 SLTKVVECIQSHSKVECQPSVYNNGLQKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPV 1371
+ +E Q K + Q V+ N ++S SP+I++ ++ ++S+ LLPAEG
Sbjct: 181 ATVTAIE-TQFQPKEDLQKLVFKNAFEQSSSPQISMSEYEEAAAVRSDSLLPAEGFNQ-- 237
Query: 1370 PANQSPLCAEQNSDGQFDDHIDPEERWESSPGFDVLVDDGSENLGYEDDPEYLLVQKRES 1191
++S L +Q+S+ Q D I+PEERWESSPGFDVLVD+ SENL YED+PEYLL + E
Sbjct: 238 --SRSLLSTDQSSEEQVDGPIEPEERWESSPGFDVLVDNISENLVYEDEPEYLLALEGEG 295
Query: 1190 RVLHEQLLQYDYEDSVGYDPLEFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREM 1011
R L+ Q L YD+ED V YD L + ++ ILY+H +Y+S+D L+N++ +R +
Sbjct: 296 RELNGQFLGYDFEDPVEYD-LMYPEAEILYDHRIYDSFDCLDNEH---------RREFWI 345
Query: 1010 MLDPMGLPNRQNFPREVDLSVRNGVDLRNQL-----XXXXXXXXXXXRGSLSHLKEAGQE 846
+ P R+NFP E+ ++ R+G+DLR++L R S L +E
Sbjct: 346 LFCP---GKRKNFPVELAVTGRSGLDLRDRLRKRRVTDGHTVTRFSRRHDSSCLIGRTRE 402
Query: 845 RPGRRHKRQTVHGRLTSEVASNRIGGRNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXX 666
R R Q + GR SEV N IG +E++ S + +G R++ S+
Sbjct: 403 RRRRHGMDQQLQGRSASEVRKNIIGMLSENETLSNRGNKQGWVRRSRLPKSRQHYKEKGH 462
Query: 665 XXXXXXXXRFSENSRGGTASQNARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTT 486
SE+SR + + R TTFTGPK+LA+IKEEKRK E G
Sbjct: 463 SQRQHIS---SEDSRKPVSRE--RISTREYTTFTGPKSLAQIKEEKRKAEENGEGFGKMG 517
Query: 485 NNGRTASQNFEGPKPLREILKDKRRLGS 402
+ T S +F+GPKPL EILKDKR+LGS
Sbjct: 518 YSSNTPSADFQGPKPLSEILKDKRKLGS 545
>ref|XP_002524463.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223536251|gb|EEF37903.1| nucleic acid binding protein,
putative [Ricinus communis]
Length = 530
Score = 382 bits (982), Expect = e-103
Identities = 230/546 (42%), Positives = 308/546 (56%), Gaps = 8/546 (1%)
Frame = -1
Query: 2015 LKMDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAF 1836
++M++++ KRNTDCVYFLASPLTCKKG ECEYRH+EIARLNPRDCWYWLAG+C NPTCAF
Sbjct: 1 MQMEEDIQKRNTDCVYFLASPLTCKKGLECEYRHNEIARLNPRDCWYWLAGDCYNPTCAF 60
Query: 1835 RHPPLEGRSETTLEPESLPAQASVPVIKSNVPCYFYFSSFCNKGENCSFLHGSNINS--G 1662
RHPPLE +E E S +SVP K+NVPCYF+F+ FCNKG+ C F+HG NS G
Sbjct: 61 RHPPLEMHAEGPPELSS----SSVPANKTNVPCYFFFNGFCNKGDRCFFMHGPEANSFTG 116
Query: 1661 QSSKSASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVY 1482
+S ++S + PL++K+ + V+A E+ + S++ K V+ ++ + Q
Sbjct: 117 KSGSTSSAIKENIPLDSKISGGNDTVSAPTEVNANPSETAAKAVKDLKLQPYEDFQFPAP 176
Query: 1481 NNGLQKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPVPANQSPLCAEQNSDGQFDDHID 1305
+ +SPSP+IAV ++ + L FLL ++S Q+ + + DDH++
Sbjct: 177 EKTVMRSPSPQIAVSQSEEAVILNPSFLLKVNSFTE----SRSLAYTTQSPEEEMDDHVE 232
Query: 1304 PEERWESSPGFDVLVDDGSENLGYEDDPEYLLVQKRESRVLHEQLLQYDYEDSVGYDPLE 1125
PEERWESSPGFDVLVDD SENL YEDD EYLL E R + L YD+E+ V YD
Sbjct: 233 PEERWESSPGFDVLVDDKSENLDYEDDQEYLLPLDMEQRDPNNCFLGYDFENLVEYDH-A 291
Query: 1124 FGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDPMGLPNRQNFPREVDLSVR 945
+ D+ Y G Y++ D +N +I D V SR + D + R+ E+ ++ +
Sbjct: 292 YHDAEDDYGSGKYDNTDFADNVHIFDDVGNDSGLSRNSVTDSLLSQKRKLVAMELSINDQ 351
Query: 944 NGVDLRNQLXXXXXXXXXXXRGS-----LSHLKEAGQERPGRRHKRQTVHGRLTSEVASN 780
VDLR++L S SHL GQ RPG Q HG+L EV S
Sbjct: 352 RIVDLRDRLGKDRAIHGHTVIRSSRRHYSSHLLGHGQGRPG---SNQRPHGKLVLEVKST 408
Query: 779 RIGGRNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQN 600
I ++ + YG + G R + S S+ S AS+
Sbjct: 409 AIEPHRKNGSQLYGGNDHGWLRHSRSNRSR----QRDKERRLARKQSLSSEVLRKPASKE 464
Query: 599 ARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKD 420
+S + S T FTGPKTLA+IKEEK+K E G T N+ R A+ +FE PKPL EILKD
Sbjct: 465 RKSSQAS-TQFTGPKTLAQIKEEKKKAEENGDYTGKTDNSSRMATADFESPKPLSEILKD 523
Query: 419 KRRLGS 402
KRR S
Sbjct: 524 KRRPSS 529
>ref|XP_003550828.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like
[Glycine max]
Length = 526
Score = 323 bits (829), Expect = 9e-86
Identities = 216/546 (39%), Positives = 297/546 (54%), Gaps = 12/546 (2%)
Frame = -1
Query: 2009 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1830
MD++ KR TDCVYFLASPLTCKKGAECEYRH+EIARLNPRDCWYWL+G CLNPTCAFRH
Sbjct: 1 MDEDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRH 60
Query: 1829 PPLEGRSETTLEPESLPAQASVPVIKSNVPCYFYFSSFCNKGENCSFLHG--SNINSGQS 1656
PPL+G + + E P Q S+P K+ VPCYF+F+ FCNKG+ CSFLHG +I + +
Sbjct: 61 PPLDGHTGAPVPSE--PTQTSLPANKTLVPCYFFFNGFCNKGDRCSFLHGPDDSIFNIKP 118
Query: 1655 SKSASLVANVHPLENKVVT-SINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYN 1479
K+ + + LENK + + GVT+ P D S + K + ++ K + Q +
Sbjct: 119 VKNENGSTDALNLENKAPSGNRTGVTST---PTDRSVAAPKNLSDLKHQPKEDHQLELPK 175
Query: 1478 NGLQKSPSPRIAVPGCDDLTL-KSEFLLPAEGIQSPVPANQSPLCAEQNSDGQFDDHIDP 1302
N Q+ ++ + + +S+ +P +G VP LC Q+S+ Q + HI+P
Sbjct: 176 NVKQQGDYLELSASEYKEAAVSRSDSSIPDDGFVHNVP----HLCTGQSSEEQVNSHIEP 231
Query: 1301 EERWES---SPGFDVLVDDGSENLGYEDDPEYLLVQKRESRVLHEQLLQYDYEDSVGYDP 1131
EE WES SPGFDVLV D ENLGYE+D EYL V R+ + L++Q +Y++ D V YD
Sbjct: 232 EEWWESSPHSPGFDVLVHDEVENLGYEEDSEYLPVVDRDEQELNDQYFRYEFIDPVEYDT 291
Query: 1130 LEFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDPMGLPNRQNFPREVDLS 951
+ ++ ILYE Y+ Y L+ D I + V + + LDP+ R E+
Sbjct: 292 I-CPEADILYEQETYDGYRCLDRDLIHVNGRTVHAYATDAFLDPILSRKRIRTSAEMAAY 350
Query: 950 VRNGVDLRNQLXXXXXXXXXXXRGSL-----SHLKEAGQERPGRRHKRQTVHGRLTSEVA 786
+N +DLR+ L G L S L QER R Q RLTS++
Sbjct: 351 DKN-LDLRDHLRRRREVNGPPVTGFLRRQESSPLMVQNQERHLRHGIEQRPSRRLTSQLG 409
Query: 785 SNRIGGRNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTAS 606
+ I E + S G+ R L RQ++++ + S+ SR
Sbjct: 410 YSAIDSTGEVETLSIGNKRR-LFRQSQAQQHRPRKNYIEKLPKRQFVS--SKISRKPVFK 466
Query: 605 QNARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREIL 426
Q + S TF+GPKTLAEIKEEK K N + + ++ S +F+ PKPL EIL
Sbjct: 467 QRGLIHESS--TFSGPKTLAEIKEEKMK------KNAEGSLHWKSTSTDFQDPKPLSEIL 518
Query: 425 KDKRRL 408
K KR +
Sbjct: 519 KVKRTM 524
>ref|XP_003525663.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like
[Glycine max]
Length = 524
Score = 323 bits (827), Expect = 1e-85
Identities = 211/544 (38%), Positives = 293/544 (53%), Gaps = 10/544 (1%)
Frame = -1
Query: 2009 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1830
MD + KR TDCVYFLASPLTCKKGAECEYRH+EIARLNPRDCWYWL+G CLNPTCAFRH
Sbjct: 1 MDQDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRH 60
Query: 1829 PPLEGRSETTLEPESLPAQASVPVIKSNVPCYFYFSSFCNKGENCSFLHG--SNINSGQS 1656
PPL+G + ++ E P Q S+P K+ VPCYF+F+ CNKG+ CSFLHG +I + +
Sbjct: 61 PPLDGHTGASVPSE--PTQTSLPANKTMVPCYFFFNGSCNKGDRCSFLHGPDDSIFTVKP 118
Query: 1655 SKSASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYNN 1476
K+ + + LENK TS + P D+S + K + ++ K + Q + +
Sbjct: 119 VKNDNGSTDALNLENK--TSSGNRIGLVSTPTDQSVAAPKNLSDLKLQPKEDHQLEIPKD 176
Query: 1475 GLQKSPSPRIAVPGCDDLTL-KSEFLLPAEGIQSPVPANQSPLCAEQNSDGQFDDHIDPE 1299
Q+ ++ + + +S+ +P +G VP LC EQ+S+ Q + HI+PE
Sbjct: 177 VKQQGYYLELSASEYKEAAVSRSDSSIPDDGFVHNVP----HLCTEQSSEEQVNSHIEPE 232
Query: 1298 ERWES---SPGFDVLVDDGSENLGYEDDPEYLLVQKRESRVLHEQLLQYDYEDSVGYDPL 1128
ERWES SPGFDVLV D +NLGYE+D EY+ V R+ + L +Q Y+++DSV YD +
Sbjct: 233 ERWESSPHSPGFDVLVHDEVDNLGYEEDSEYVTVGDRDEQELDDQYFGYEFKDSVEYDTI 292
Query: 1127 EFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDPMGLPNRQNFPREVDLSV 948
++ ILYE Y+ Y L+ I + + R++ LDP R E+
Sbjct: 293 -CPEADILYEQETYDGYRFLDRGLIHANGRTIHAYPRDVFLDPRLSRKRIRMSAEMAAYD 351
Query: 947 RNGVDLRNQLXXXXXXXXXXXRGSLSHLKEAGQERPGRRHKRQTVH----GRLTSEVASN 780
+N +DLR+ L L R RH+R + RLTS++ +
Sbjct: 352 KN-LDLRDHLRRRREIKGPPVSNFLRRESSPLMIRKQERHQRHGIEQRPIRRLTSQLGYS 410
Query: 779 RIGGRNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQN 600
I E S + HR L R ++++ K S+ SR Q
Sbjct: 411 AIDSIGEVGTLSVANKHR-LFRHSQAQQHKPRKHYREKLPKRQFLS--SKISRKPAFKQ- 466
Query: 599 ARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKD 420
R + F+GPKTLAEIKEEK K +E GS + ++ S +F+ PKPL EILKD
Sbjct: 467 -RGFIHEFSAFSGPKTLAEIKEEKMKKAE-----GSL--HWKSTSTDFQDPKPLSEILKD 518
Query: 419 KRRL 408
KR +
Sbjct: 519 KRTM 522