BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014276
         (1116 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...   396   e-108
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...   377   e-102
ref|XP_002523877.1| pentatricopeptide repeat-containing protein,...   350   3e-94
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...   348   2e-93
ref|XP_003626823.1| Pentatricopeptide repeat-containing protein ...   345   2e-92

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
            chloroplastic [Vitis vinifera]
          Length = 313

 Score =  396 bits (1017), Expect = e-108
 Identities = 191/301 (63%), Positives = 238/301 (79%)
 Frame = -2

Query: 1001 YIPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIF 822
            +IP + +L++SC S ++L+ L+++HARIIT+GI  HDF+RAKL++SYA+C QM +A+YIF
Sbjct: 6    HIPSFATLLDSCASKRDLQKLKQIHARIITVGISRHDFIRAKLVASYASCAQMSQASYIF 65

Query: 821  SVTNRHSTFLYNTMIRGYAALNHFRDSMNVYSQMRFDGKRHDRHTLPSVLKSCAGLSAXX 642
            S+TNR  TFLYN++IRGY++L  F  S++++ QM F  K  D +TLP+VLKSC+GLSA  
Sbjct: 66   SLTNRRPTFLYNSLIRGYSSLFLFSQSLSIFCQMLFAHKPIDCYTLPAVLKSCSGLSALR 125

Query: 641  XXXXXXXXXXVNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYG 462
                       NG + D+AT NALISMY KCGDL  ARKVFD M ERNL+TWSAM+AGYG
Sbjct: 126  LGRQVHCAVVANGLASDLATINALISMYSKCGDLAAARKVFDRMTERNLVTWSAMMAGYG 185

Query: 461  MHGFSSEVFKLFEEMLDVGESPDGVTFTAILAACSHGGLTDMGRGLFKMMEERFGIKLGL 282
            +HG   EVF+LF+ M+D GE PDGVTFTA+LAACSHGG  + GR  F MMEERFG++  L
Sbjct: 186  VHGVFGEVFELFDGMVDAGEVPDGVTFTAVLAACSHGGFMENGRKYFGMMEERFGVRPRL 245

Query: 281  EHITCMVDMLGRAGHVEEAEALISRIEVEPDDALWGALLGACKLHGKMEVAERVAEKVYG 102
            EH TCMVDMLGRAG VEEAE LI  +EVEPD+ALWGALL +CK+HGK+EVAERVAEKVYG
Sbjct: 246  EHYTCMVDMLGRAGRVEEAEELIEGMEVEPDEALWGALLASCKIHGKVEVAERVAEKVYG 305

Query: 101  R 99
            R
Sbjct: 306  R 306


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score =  377 bits (967), Expect = e-102
 Identities = 184/300 (61%), Positives = 228/300 (76%)
 Frame = -2

Query: 998 IPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFS 819
           +P Y +L+++C+S+K+LKNL+++HA  ITLGI  +DF+R+KL+SSYA C Q+HEA  +FS
Sbjct: 8   VPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEANILFS 67

Query: 818 VTNRHSTFLYNTMIRGYAALNHFRDSMNVYSQMRFDGKRHDRHTLPSVLKSCAGLSAXXX 639
            T R  TFL+N++IR Y++LN F  S+ ++ QM    K  DRHTLP VLKSCAGLSA   
Sbjct: 68  FTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCAGLSALRL 127

Query: 638 XXXXXXXXXVNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGM 459
                    VNGF  D+A  NALI+MY KCG LV ARK+FD M +RN IT+S M+AGYGM
Sbjct: 128 GQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFSTMMAGYGM 187

Query: 458 HGFSSEVFKLFEEMLDVGESPDGVTFTAILAACSHGGLTDMGRGLFKMMEERFGIKLGLE 279
           HG   EVF+LF++M++ GE PDGVTFTA+L+ACSHGG  D GR   KMME RFG+K GL 
Sbjct: 188 HGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRFGVKPGLH 247

Query: 278 HITCMVDMLGRAGHVEEAEALISRIEVEPDDALWGALLGACKLHGKMEVAERVAEKVYGR 99
           H TCMVDMLGR G VEEAE LI R+EV+PD+ALWGALLGACK HGK+EV ERV E+VYGR
Sbjct: 248 HYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERVEERVYGR 307


>ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536965|gb|EEF38603.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 302

 Score =  350 bits (899), Expect = 3e-94
 Identities = 168/298 (56%), Positives = 220/298 (73%)
 Frame = -2

Query: 998 IPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFS 819
           IPLY SLI++C +TKN   L ++HA+ IT GI++ DF+R+KL+S+YA+C QM +AA +FS
Sbjct: 4   IPLYASLIDACITTKNFTTLIQIHAQTITNGIYHRDFIRSKLVSAYASCTQMRQAALLFS 63

Query: 818 VTNRHSTFLYNTMIRGYAALNHFRDSMNVYSQMRFDGKRHDRHTLPSVLKSCAGLSAXXX 639
            TNR +TFL+N++IR YA+LN F  S++ + +M    K  DRHTLPSVLKSCAGLSA   
Sbjct: 64  FTNRQTTFLFNSLIRAYASLNLFSHSLSFFRRMLDACKPIDRHTLPSVLKSCAGLSAVRL 123

Query: 638 XXXXXXXXXVNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGM 459
                    +NG ++D+A  NALI+MY KCG+L  ARKVFD M  RN ++W+ M+AGYGM
Sbjct: 124 GQQVHGILLINGLAFDLANSNALINMYAKCGNLAGARKVFDRMPARNEVSWATMMAGYGM 183

Query: 458 HGFSSEVFKLFEEMLDVGESPDGVTFTAILAACSHGGLTDMGRGLFKMMEERFGIKLGLE 279
           HG   EV  LF  M++ G S D V  TA+L+ACSHGG+ + G   F MMEERFG+K  LE
Sbjct: 184 HGKGGEVLVLFNRMVEEGSSVDAVCLTAVLSACSHGGMVEKGAEYFGMMEERFGVKPSLE 243

Query: 278 HITCMVDMLGRAGHVEEAEALISRIEVEPDDALWGALLGACKLHGKMEVAERVAEKVY 105
           H TCMVDMLGRAG VEEAE L+ R+E++PD+ LW ALLG+CK+HGK++VAERV+  V+
Sbjct: 244 HYTCMVDMLGRAGRVEEAEELVMRMEIKPDEVLWAALLGSCKIHGKVDVAERVSRNVF 301


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  348 bits (892), Expect = 2e-93
 Identities = 166/298 (55%), Positives = 218/298 (73%)
 Frame = -2

Query: 995 PLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFSV 816
           PLY +L+  C S+KN+ +L+ +HAR I LGI + DF+R KL+S YA+C ++H+A  +FS 
Sbjct: 9   PLYATLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILFSF 68

Query: 815 TNRHSTFLYNTMIRGYAALNHFRDSMNVYSQMRFDGKRHDRHTLPSVLKSCAGLSAXXXX 636
           TNR  TFLYN++IR Y +LN F+++++++ +MR   K  D HTLP VLKSCAGLSA    
Sbjct: 69  TNRKPTFLYNSLIRAYLSLNLFKETLSIFREMRLSYKPFDCHTLPLVLKSCAGLSALRLG 128

Query: 635 XXXXXXXXVNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGMH 456
                   VNGF+ D+   NALI+MY KCG+L  ARKVFDGM ERN +TWS M+AGYGMH
Sbjct: 129 KQVHGAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMMAGYGMH 188

Query: 455 GFSSEVFKLFEEMLDVGESPDGVTFTAILAACSHGGLTDMGRGLFKMMEERFGIKLGLEH 276
           G   EVF++F  M++VGE  D V+FT +L ACSHGG  + GR +F+MM+ RFG+K  + H
Sbjct: 189 GRFEEVFEMFNRMVEVGERMDNVSFTVVLTACSHGGFVEKGREIFEMMKVRFGVKPDVRH 248

Query: 275 ITCMVDMLGRAGHVEEAEALISRIEVEPDDALWGALLGACKLHGKMEVAERVAEKVYG 102
            TCMVDMLGR G VEEAE L  +++V PD+AL GAL GACK HG+++VAERVAE+ YG
Sbjct: 249 YTCMVDMLGRVGLVEEAEKLTLKMDVRPDEALVGALFGACKTHGRVDVAERVAERFYG 306


>ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355520845|gb|AET01299.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 355

 Score =  345 bits (884), Expect = 2e-92
 Identities = 166/298 (55%), Positives = 217/298 (72%)
 Frame = -2

Query: 995 PLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFSV 816
           PLY +L+  C S+KN+ +L+ +HAR I LGI + DF+R KL+S YA+C ++H+A  +FS 
Sbjct: 9   PLYATLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILFSF 68

Query: 815 TNRHSTFLYNTMIRGYAALNHFRDSMNVYSQMRFDGKRHDRHTLPSVLKSCAGLSAXXXX 636
           TNR  TFL N++IR Y +LN F+++++++ +MR   K  D HTLP VLKSCAGLSA    
Sbjct: 69  TNRKPTFLNNSLIRAYLSLNLFKETLSLFREMRLSYKPFDCHTLPLVLKSCAGLSALRLG 128

Query: 635 XXXXXXXXVNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGMH 456
                   VNGF+ D+   NALI+MY KCG+L  ARKVFDGM ERN +TWS MIAGYGMH
Sbjct: 129 KQVHGAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMIAGYGMH 188

Query: 455 GFSSEVFKLFEEMLDVGESPDGVTFTAILAACSHGGLTDMGRGLFKMMEERFGIKLGLEH 276
           G   EVF++F  M++VGE  D V+FT +L ACSHGG  + GR +F+MM+ RFG+K  + H
Sbjct: 189 GRFEEVFEMFNRMVEVGERMDNVSFTVVLTACSHGGFVEKGREIFEMMKVRFGVKPDVRH 248

Query: 275 ITCMVDMLGRAGHVEEAEALISRIEVEPDDALWGALLGACKLHGKMEVAERVAEKVYG 102
            TCMVDMLGR G VEEAE L  +++V PD+AL GAL GACK HG+++VAERVAE+ YG
Sbjct: 249 YTCMVDMLGRVGLVEEAEKLTLKMDVRPDEALVGALFGACKTHGRVDVAERVAERFYG 306