BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014253
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpg|DAA40346.1| TPA: F-box domain containing protein [Zea mays]        56   3e-06
ref|NP_001151486.1| F-box domain containing protein [Zea mays] g...    56   3e-06
ref|XP_002520898.1| conserved hypothetical protein [Ricinus comm...    56   4e-06
ref|XP_003578053.1| PREDICTED: putative F-box protein At1g33530-...    55   6e-06

>tpg|DAA40346.1| TPA: F-box domain containing protein [Zea mays]
          Length = 442

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
 Frame = -2

Query: 423 LRYSCKEWYNLFRSSRFILAHFHHS-NHSLISIPMTKAFLRRLGVRYARPDIIQIRETKI 247
           LR  CK+W+N+    RFI  H +H+  H L+ +P        L  + A+P +  I   K 
Sbjct: 64  LRQVCKQWWNMVSVPRFIKEHAYHAPKHLLLYLPKLN-ISASLHPKTAKPCLATIINEKW 122

Query: 246 SVRNLSREFVDNASKFVDNTSKFVVNTCNGLVLFEDRLGNLTVSNPATGQML-TLPPCSP 70
           S    +   +D            +  +CNGL+ F  +   L +SNPATGQ L  L P   
Sbjct: 123 SPLTWASSHMD--------PDDHLFASCNGLLCFY-KTYTLKISNPATGQCLHLLKPDGI 173

Query: 69  RSDSLKYLLGITFVDSTGEYKVV 1
                 YL    F   TGEYK+V
Sbjct: 174 LLYDFHYLYSFGFHPITGEYKLV 196


>ref|NP_001151486.1| F-box domain containing protein [Zea mays]
           gi|195647138|gb|ACG43037.1| F-box domain containing
           protein [Zea mays] gi|223943457|gb|ACN25812.1| unknown
           [Zea mays] gi|414589774|tpg|DAA40345.1| TPA: F-box
           domain containing protein [Zea mays]
          Length = 417

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
 Frame = -2

Query: 423 LRYSCKEWYNLFRSSRFILAHFHHS-NHSLISIPMTKAFLRRLGVRYARPDIIQIRETKI 247
           LR  CK+W+N+    RFI  H +H+  H L+ +P        L  + A+P +  I   K 
Sbjct: 39  LRQVCKQWWNMVSVPRFIKEHAYHAPKHLLLYLPKLN-ISASLHPKTAKPCLATIINEKW 97

Query: 246 SVRNLSREFVDNASKFVDNTSKFVVNTCNGLVLFEDRLGNLTVSNPATGQML-TLPPCSP 70
           S    +   +D            +  +CNGL+ F  +   L +SNPATGQ L  L P   
Sbjct: 98  SPLTWASSHMD--------PDDHLFASCNGLLCFY-KTYTLKISNPATGQCLHLLKPDGI 148

Query: 69  RSDSLKYLLGITFVDSTGEYKVV 1
                 YL    F   TGEYK+V
Sbjct: 149 LLYDFHYLYSFGFHPITGEYKLV 171


>ref|XP_002520898.1| conserved hypothetical protein [Ricinus communis]
           gi|223540029|gb|EEF41607.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 358

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
 Frame = -2

Query: 438 RKVYELRYSCKEWYNLFRSSRFILAHFHHSNHSLISI--PMTKAFLRR-LGVRYARPDII 268
           + +  LR  CK W+NL  SS F   H   S+H+L+ +    + +F  R     +   D+ 
Sbjct: 18  KSLMRLRCVCKTWFNLISSSSFQDLHRSRSHHNLLFLFRSTSSSFHNRFFFYSFCSLDVT 77

Query: 267 QIRETKISVRNLSREFVDNASKFVDNTSKFVVNTCNGLVLFEDRLGNLTVSNPATGQMLT 88
                + SV+             VD+  K V+ +C+GLV F      + V NPAT Q+L 
Sbjct: 78  GSLGARFSVK-------------VDDPIKLVLPSCSGLVCFATDT-RIYVCNPATRQILA 123

Query: 87  LPPCSPRSDSLKYLLGITFVDSTGEYKVV 1
           L P SP+  S+    G  +VDS   YKVV
Sbjct: 124 L-PVSPQRTSIAG-FGFGYVDSIKGYKVV 150


>ref|XP_003578053.1| PREDICTED: putative F-box protein At1g33530-like isoform 1
           [Brachypodium distachyon]
           gi|357158215|ref|XP_003578054.1| PREDICTED: putative
           F-box protein At1g33530-like isoform 2 [Brachypodium
           distachyon]
          Length = 378

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
 Frame = -2

Query: 441 ARKVYELRYSCKEWYNLFRSSRFILAHFHHSNHSLISIPMTKAFLRRLGVRYARPDIIQI 262
           AR +   R  CK W ++     F+  H   S   L+     +A  R L +  A       
Sbjct: 38  ARTLVSCRMVCKSWMSVLSDMHFVYEHLRRSQQKLLLFANDRANDRSLAMVLA------- 90

Query: 261 RETKISVRNLSREFVDNASKFVDNTSKFVVNTCNGLVLFEDRLGNLTVSNPATGQMLTLP 82
            +   S+  LSR  + + S FV N       +CNGL+   D  G + + NP TG+ + LP
Sbjct: 91  -DASGSMYQLSRPLLASRSLFVHN-------SCNGLLCLGDSTGAVELLNPTTGESVVLP 142

Query: 81  P--CSPRSDSLK----YLLGITFVDSTGEYKVV 1
              C+  S        + LG  F  ST E+K+V
Sbjct: 143 TPMCTAGSSQFSSCNWHCLG--FCQSTKEHKIV 173