BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014224
         (1097 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   164   4e-38
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              164   4e-38
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...   134   4e-29
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   129   1e-27
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   129   1e-27

>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  164 bits (415), Expect = 4e-38
 Identities = 115/317 (36%), Positives = 161/317 (50%), Gaps = 43/317 (13%)
 Frame = +1

Query: 4    VLQRHACVVQGLWVARSSLLELKGDDA--IARDYILYSFNNDIVIRFKQLDDYYQRFKEA 177
            VL +HA +VQGLWV +SSLL   G     +ARDYIL  F+   +I + Q+D       +A
Sbjct: 360  VLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVD-VPGSLNKA 418

Query: 178  FSRYLKHFAVHRAHCEDWKLKEAADATFVKHYPNIVKKQKEAWEKQEPTILDNI------ 339
               +L   AV R    DWK KE  D +F+K +P+IV++Q+  WE  E  I D I      
Sbjct: 419  LKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRR 478

Query: 340  --------KPR-ATKTARMAKSKIPKNSVIGDHGVKIGVNSIPSSGPMTVPDATQEA--Q 486
                    KP  A KT    KS     +    +G  +   ++ +     +P A +E    
Sbjct: 479  GPVTKNSGKPSIANKTGTSTKSD---GATRATNGTPVRRTAMSAETREALPKALEEVFRL 535

Query: 487  ENIRSLQL-----------KQTGLKAGGR----GVRGADSGQASVN---------IHGVF 594
              + S QL           K T  K   R       GAD+ Q  ++         +HGV+
Sbjct: 536  HKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVY 595

Query: 595  VPKSSGNANLDPIRGVVIDLFCAKEPDAKLKKAEIVEAAKIQLKRTIDDKELKPVLKQLC 774
            V K+S ++  +P+R VV+DLFC KEP+AKLK+A+I+EAAKI LK+ I   E   V+ +LC
Sbjct: 596  VWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSELC 655

Query: 775  VSKGGSWVLRKGDGDPK 825
             S+G  WVL+ GDG PK
Sbjct: 656  ESRGSLWVLKSGDGKPK 672


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  164 bits (415), Expect = 4e-38
 Identities = 115/317 (36%), Positives = 161/317 (50%), Gaps = 43/317 (13%)
 Frame = +1

Query: 4    VLQRHACVVQGLWVARSSLLELKGDDA--IARDYILYSFNNDIVIRFKQLDDYYQRFKEA 177
            VL +HA +VQGLWV +SSLL   G     +ARDYIL  F+   +I + Q+D       +A
Sbjct: 376  VLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVD-VPGSLNKA 434

Query: 178  FSRYLKHFAVHRAHCEDWKLKEAADATFVKHYPNIVKKQKEAWEKQEPTILDNI------ 339
               +L   AV R    DWK KE  D +F+K +P+IV++Q+  WE  E  I D I      
Sbjct: 435  LKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRR 494

Query: 340  --------KPR-ATKTARMAKSKIPKNSVIGDHGVKIGVNSIPSSGPMTVPDATQEA--Q 486
                    KP  A KT    KS     +    +G  +   ++ +     +P A +E    
Sbjct: 495  GPVTKNSGKPSIANKTGTSTKSD---GATRATNGTPVRRTAMSAETREALPKALEEVFRL 551

Query: 487  ENIRSLQL-----------KQTGLKAGGR----GVRGADSGQASVN---------IHGVF 594
              + S QL           K T  K   R       GAD+ Q  ++         +HGV+
Sbjct: 552  HKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVY 611

Query: 595  VPKSSGNANLDPIRGVVIDLFCAKEPDAKLKKAEIVEAAKIQLKRTIDDKELKPVLKQLC 774
            V K+S ++  +P+R VV+DLFC KEP+AKLK+A+I+EAAKI LK+ I   E   V+ +LC
Sbjct: 612  VWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSELC 671

Query: 775  VSKGGSWVLRKGDGDPK 825
             S+G  WVL+ GDG PK
Sbjct: 672  ESRGSLWVLKSGDGKPK 688


>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
            predicted protein [Populus trichocarpa]
          Length = 667

 Score =  134 bits (337), Expect = 4e-29
 Identities = 107/311 (34%), Positives = 158/311 (50%), Gaps = 38/311 (12%)
 Frame = +1

Query: 4    VLQRHACVVQGLWVARSSLL--ELKGDDAI---ARDYILYSFNNDIVIRFKQLDDYYQRF 168
            VLQ +  +VQGLWV ++SLL    K  + +   ARDYIL  F+  +V+   +L+   +  
Sbjct: 375  VLQEYGQLVQGLWVPKTSLLFPNPKPTEKVKLAARDYILLLFSKSLVVTPSELNVPMKPL 434

Query: 169  KEAFSRYLKHFAVHRAHCEDWKLKEAADATFVKHYPNIVKKQKEAWE-----------KQ 315
                  +L  FAV R   +DWK KE  D  FV+ YP+IV+KQ++AWE           + 
Sbjct: 435  --ILKSFLNIFAVERPSFKDWKFKENVDTLFVELYPDIVRKQEQAWEVMGKNISAAFDRA 492

Query: 316  EPTILDNI--KPRAT---KTARMAKSKIPKNSVIGDHGV-KIGVNSIPSSGPMTVPDATQ 477
              ++  N+  KP+ T   +T    +  +PK  V+  H V + G   I             
Sbjct: 493  GKSVSKNVITKPKKTMTDETREALRKALPK--VLQTHKVCRYGFQMIC------------ 538

Query: 478  EAQENIRSLQLKQTGL-KAGGRGVRGADSG-------------QASVNIHGVFVPKSSG- 612
               + +R L + Q+ L KA  R    A SG             + + NIHG +V KSS  
Sbjct: 539  ---QGLRQLAISQSTLPKADPRIAVAAASGAEAPPEELQEVISEVATNIHGFYVLKSSPE 595

Query: 613  NANLDPI-RGVVIDLFCAKEPDAKLKKAEIVEAAKIQLKRTIDDKELKPVLKQLCVSKGG 789
            + + DP+ R VVI LF A+ P+A +KK+E+  AA+++LKR   + E   V+  LC SKG 
Sbjct: 596  HPDFDPLSRKVVIGLFLARGPNANIKKSEVQAAARLELKREPSNSEYIKVMTDLCESKGS 655

Query: 790  SWVLRKGDGDP 822
            +WVL+ GDG P
Sbjct: 656  AWVLKSGDGKP 666


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  129 bits (325), Expect = 1e-27
 Identities = 100/315 (31%), Positives = 153/315 (48%), Gaps = 40/315 (12%)
 Frame = +1

Query: 1    EVLQRHACVVQGLWVARSS-LLELKGDDAIARDYILYSFNNDIVIRFKQLDDYYQRFKEA 177
            E LQ++A +VQGLWV +S  L+   G    ARD++L+ F+ + V+   Q++   +  ++ 
Sbjct: 389  ETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQIN-VPKSLRDR 447

Query: 178  FSRYLKHFAVHRAHCEDWKLKEAADATFVKHYPNIVKKQKEAWEKQEP--TILDNIKPRA 351
               +L  F V R   +DWK KE  D  F+ ++  I +KQ+E W   E   T L +IK   
Sbjct: 448  VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 507

Query: 352  TKTARMAK-SKIPK--NSVIGDHGVKIGVNS-IPSSGPMT------VPDATQEAQEN--- 492
               A   K   +PK    V  D       N+ +   G M+      +P A Q+  +N   
Sbjct: 508  HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 567

Query: 493  ---------IRSLQLKQTGL-KAGGRGVRGADSG-------------QASVNIHGVFVPK 603
                     +R L + Q+ L KA  R    A  G             Q +  IHG++V  
Sbjct: 568  CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELXKIISQVATEIHGLYVLT 627

Query: 604  SSG-NANLDPIRGVVIDLFCAKEPDAKLKKAEIVEAAKIQLKRTIDDKELKPVLKQLCVS 780
            SS  +   DP+R VVI L   + P A LKKA+++EA+K +L R I+  E   V+ ++C+S
Sbjct: 628  SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 687

Query: 781  KGGSWVLRKGDGDPK 825
             G SW L+ GDG+ +
Sbjct: 688  HGSSWTLKSGDGNSR 702


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
            sativus]
          Length = 702

 Score =  129 bits (325), Expect = 1e-27
 Identities = 100/315 (31%), Positives = 153/315 (48%), Gaps = 40/315 (12%)
 Frame = +1

Query: 1    EVLQRHACVVQGLWVARSS-LLELKGDDAIARDYILYSFNNDIVIRFKQLDDYYQRFKEA 177
            E LQ++A +VQGLWV +S  L+   G    ARD++L+ F+ + V+   Q++   +  ++ 
Sbjct: 389  ETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQIN-VPKSLRDR 447

Query: 178  FSRYLKHFAVHRAHCEDWKLKEAADATFVKHYPNIVKKQKEAWEKQEP--TILDNIKPRA 351
               +L  F V R   +DWK KE  D  F+ ++  I +KQ+E W   E   T L +IK   
Sbjct: 448  VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 507

Query: 352  TKTARMAK-SKIPK--NSVIGDHGVKIGVNS-IPSSGPMT------VPDATQEAQEN--- 492
               A   K   +PK    V  D       N+ +   G M+      +P A Q+  +N   
Sbjct: 508  HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 567

Query: 493  ---------IRSLQLKQTGL-KAGGRGVRGADSG-------------QASVNIHGVFVPK 603
                     +R L + Q+ L KA  R    A  G             Q +  IHG++V  
Sbjct: 568  CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 627

Query: 604  SSG-NANLDPIRGVVIDLFCAKEPDAKLKKAEIVEAAKIQLKRTIDDKELKPVLKQLCVS 780
            SS  +   DP+R VVI L   + P A LKKA+++EA+K +L R I+  E   V+ ++C+S
Sbjct: 628  SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 687

Query: 781  KGGSWVLRKGDGDPK 825
             G SW L+ GDG+ +
Sbjct: 688  HGSSWTLKSGDGNSR 702