BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014213
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541606.1| PREDICTED: RNA-binding protein 28-like [Glyc...    60   1e-07
emb|CBI38027.3| unnamed protein product [Vitis vinifera]               60   2e-07
ref|XP_002512958.1| RNA-binding protein, putative [Ricinus commu...    58   9e-07

>ref|XP_003541606.1| PREDICTED: RNA-binding protein 28-like [Glycine max]
          Length = 956

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 41/108 (37%), Positives = 52/108 (48%), Gaps = 20/108 (18%)
 Frame = +2

Query: 2   RAAELKNGALISGRKIRVKHAMHRPPNEQRKSKANQ-----EIIKTKXXXXXXXXXXXXX 166
           RA ELKNG  + GRKI VKHAM RPP E+R+SK NQ     ++ K K             
Sbjct: 74  RAIELKNGTSVEGRKIVVKHAMPRPPREERQSKPNQAGKTDDLTKPKDDDEDGRSSGSEK 133

Query: 167 XXGQSK---------------VIIKTKTLPIELTDKEDCSDKQKVART 265
               SK               + IK   L  ++ D+  CS+KQ+VART
Sbjct: 134 NVSVSKEEELQVSKQKSTRKPMEIKKSALCDDVADEGGCSEKQRVART 181


>emb|CBI38027.3| unnamed protein product [Vitis vinifera]
          Length = 918

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 43/95 (45%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
 Frame = +2

Query: 2   RAAELKNGALISGRKIRVKHAMHRPPNEQRKSKANQ-EIIKTKXXXXXXXXXXXXXXXGQ 178
           RA ELKNG+ I GRKI VK AMHR P EQR+SK NQ +IIKT+                 
Sbjct: 75  RAIELKNGSSIGGRKIGVKLAMHRTPLEQRRSKENQDDIIKTRTEKDSSSEVVKQGHASD 134

Query: 179 SKVIIKTKTLPIEL------TDKEDCSDKQKVART 265
            + I K   L   L       DK   S+KQ+VART
Sbjct: 135 LQEIEKHVELRKALKPCTDQADKGSFSEKQRVART 169


>ref|XP_002512958.1| RNA-binding protein, putative [Ricinus communis]
           gi|223547969|gb|EEF49461.1| RNA-binding protein,
           putative [Ricinus communis]
          Length = 916

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
 Frame = +2

Query: 2   RAAELKNGALISGRKIRVKHAMHRPPNEQRKSKANQEIIKTKXXXXXXXXXXXXXXXGQS 181
           RA ELK+G+ +SG+KI VKHAM R P +QR++KA Q +                    + 
Sbjct: 79  RAIELKDGSSVSGQKIFVKHAMSRAPLDQRRAKAAQVVESDGAAKTENDTTRVDKYASKL 138

Query: 182 KVII------KTKTLPIELTDKEDCSDKQKVART 265
              +      K   L  EL D+E+CS+KQ+VART
Sbjct: 139 TEAVKHLKPRKPVKLSSELVDEENCSEKQRVART 172