BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014208
         (292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ric...    73   3e-11
ref|XP_002334451.1| predicted protein [Populus trichocarpa] gi|2...    68   9e-10
ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...    67   1e-09
gb|EEE56981.1| hypothetical protein OsJ_06712 [Oryza sativa Japo...    67   2e-09
ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine...    66   3e-09

>ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
           gi|223532629|gb|EEF34415.1| prokaryotic DNA
           topoisomerase, putative [Ricinus communis]
          Length = 1071

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 45/87 (51%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = +1

Query: 34  VDKSNLTPDNSKKTVEKPTRKRKPQKKVTVHMKPDKAPAVLVEVKKRPLEKG-LRSLYPP 210
           +D S  T     K   KPT K K  K  TV + PDK        K +P  +G L+ LYPP
Sbjct: 229 LDASASTKPQPNKKTRKPTGKPKAIK--TVKVSPDKQQQHKPMHKSKPFRQGSLKPLYPP 286

Query: 211 TGKSVVVVESLTKAKVIQRYLGDMYEV 291
           T KSVVVVES+TKAKVIQ YLG M+EV
Sbjct: 287 TAKSVVVVESVTKAKVIQGYLGPMFEV 313


>ref|XP_002334451.1| predicted protein [Populus trichocarpa] gi|222872210|gb|EEF09341.1|
           predicted protein [Populus trichocarpa]
          Length = 780

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 47/104 (45%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
 Frame = +1

Query: 1   QASEILPAGDKVDKSNLTPDNS------KKTVEKPTRKRKPQKKVTVHMKPDKAPAVLVE 162
           +A+E +P G    +SN    NS      KK V     K+KPQK                 
Sbjct: 255 KATEEMPNGSTKQQSNKKNGNSSIKRTTKKAVNGSAEKQKPQKIG--------------- 299

Query: 163 VKKRPLEKG-LRSLYPPTGKSVVVVESLTKAKVIQRYLGDMYEV 291
            K +P  +G L+SLYP  GK VVVVES+TKAKVIQ YLGDMYEV
Sbjct: 300 -KLQPFAQGKLKSLYPSAGKCVVVVESVTKAKVIQGYLGDMYEV 342


>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 46/103 (44%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
 Frame = +1

Query: 1   QASEILPAGDK----VDKSNLTPDNSKKTVEKPTRKRKPQKKVTVHMKPDKAPAV--LVE 162
           QAS+    G+K    +D S  T   SKK      +K K  K      K      +  +  
Sbjct: 306 QASKNNSTGNKPVEALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKS 365

Query: 163 VKKRPLEKGLRSLYPPTGKSVVVVESLTKAKVIQRYLGDMYEV 291
           +++RPL+K    LYP +GKSVVVVES+TKAKVIQ YLGDMYEV
Sbjct: 366 LEQRPLKK----LYPSSGKSVVVVESVTKAKVIQGYLGDMYEV 404


>gb|EEE56981.1| hypothetical protein OsJ_06712 [Oryza sativa Japonica Group]
          Length = 962

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 13/103 (12%)
 Frame = +1

Query: 22  AGDKVDKSNLTPDNSKKTVEKP------TRKRKPQKKVTVHMKPDKAPAVLVEVKKRPL- 180
           A  K+  ++++ + +K+ + K       +R +K   ++    K  K+ A   E+  +   
Sbjct: 77  AAAKIGTTDVSEEENKREISKSEKNANISRDKKTSNRLKKFSKAKKSAAAKAEICTKSSV 136

Query: 181 ------EKGLRSLYPPTGKSVVVVESLTKAKVIQRYLGDMYEV 291
                 +K L  LYPPT KSV+VVES+TKAKVIQ+YLGDMYEV
Sbjct: 137 DSSDSEQKPLVPLYPPTAKSVIVVESVTKAKVIQKYLGDMYEV 179


>ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1070

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   QASEILPAGDKVDKSNLTPDNSKKTVEKPTRK-RKPQKKVTVHMKPDKAPAVLVEVKKRP 177
           Q    + A  K  K N   D+ K   E    +  +        +K     + L+E  K  
Sbjct: 188 QEDGAVEASKKSSKGNKKKDSKKSLTESAIEEITENSASAKDKVKKKNGNSSLIEEAKPL 247

Query: 178 LEKGLRSLYPPTGKSVVVVESLTKAKVIQRYLGDMYEV 291
                + LYPPTGKSVVVVES+TKAKVI+RYLGDMYEV
Sbjct: 248 WNFTYKPLYPPTGKSVVVVESVTKAKVIKRYLGDMYEV 285