BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014150
         (2285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF22733.1| U2AF large subunit [Brachypodium distachyon]            89   7e-15
gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]           83   4e-13
ref|XP_001416543.1| predicted protein [Ostreococcus lucimarinus ...    80   2e-12
sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large...    80   2e-12
ref|XP_003577312.1| PREDICTED: splicing factor U2af large subuni...    80   2e-12

>gb|ACF22733.1| U2AF large subunit [Brachypodium distachyon]
          Length = 569

 Score = 88.6 bits (218), Expect = 7e-15
 Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
 Frame = -2

Query: 1006 QAMSRIHVMSQASRHARRLYVGGLPSETSKEAIVELFNCKVK--GSFHSG---VVLDVHV 842
            QAM++ H+  QA+RHARR+YVGGLP   +++++   FN  +   G   +G    VL+V++
Sbjct: 219  QAMTQQHIFPQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYI 278

Query: 841  NQEESYAIVEFFSVEEASQAMKLGTIYLEGAQLVIRRPNDYNARLDPYHVPDLP 680
            N ++ +A VE  SVEEAS AM L  I  EGA + +RRP DYN  L     P  P
Sbjct: 279  NHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLASALGPSQP 332


>gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 506

 Score = 82.8 bits (203), Expect = 4e-13
 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
 Frame = -2

Query: 976 QASRHARRLYVGGLPSETSKEAIVELFNCKVK--GSFHSG---VVLDVHVNQEESYAIVE 812
           QA+RHARR+YVGGLPS  +++++   F+  +   G   +G    V+DV++N E+ +A VE
Sbjct: 168 QATRHARRVYVGGLPSSANEQSVATFFSHVMYAIGGNTAGPGDAVIDVYINHEKKFAFVE 227

Query: 811 FFSVEEASQAMKLGTIYLEGAQLVIRRPNDYNARLDPYHVPDLP 680
             SVEEAS AM L  +  EG  + +RRP+DYNA L     P  P
Sbjct: 228 MRSVEEASNAMALDGVIFEGEPVRVRRPSDYNASLAATLGPSQP 271


>ref|XP_001416543.1| predicted protein [Ostreococcus lucimarinus CCE9901]
           gi|144576769|gb|ABO94836.1| predicted protein
           [Ostreococcus lucimarinus CCE9901]
          Length = 291

 Score = 80.5 bits (197), Expect = 2e-12
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
 Frame = -2

Query: 979 SQASRHARRLYVGGLPSETSKEAIVELFNCKV-----KGSFHSGVVLDVHVNQEESYAIV 815
           +QA+RHARR+YVGG+P  T++  +   FN  +             V++V++N E+ +A V
Sbjct: 2   AQATRHARRIYVGGIPLTTNEADVNAFFNNALLAVGGTNGAEGQPVVNVYINVEKKFAFV 61

Query: 814 EFFSVEEASQAMKLGTIYLEGAQLVIRRPNDYNARLDPYHVPDLP 680
           EF SVEEAS A+ L  I L+G  + IRRPNDYN  L     P +P
Sbjct: 62  EFRSVEEASNALALDGIVLDGVPVRIRRPNDYNPSLAHDLGPSMP 106


>sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large subunit B; AltName:
           Full=U2 auxiliary factor 65 kDa subunit B; AltName:
           Full=U2 small nuclear ribonucleoprotein auxiliary factor
           large subunit B; Short=U2 snRNP auxiliary factor large
           subunit B gi|68036764|gb|AAY84880.1| U2AF large subunit
           [Triticum aestivum]
          Length = 543

 Score = 80.1 bits (196), Expect = 2e-12
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
 Frame = -2

Query: 976 QASRHARRLYVGGLPSETSKEAIVELFNCKVK--GSFHSG---VVLDVHVNQEESYAIVE 812
           QA+RHARR+YVGGLP   +++++   FN  +   G   +G    VL+V++N ++ +A VE
Sbjct: 201 QATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 260

Query: 811 FFSVEEASQAMKLGTIYLEGAQLVIRRPNDYNARLDPYHVPDLP 680
             SVEEAS AM L  I  EGA + +RRP DYN  L     P  P
Sbjct: 261 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQP 304


>ref|XP_003577312.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
            distachyon]
          Length = 576

 Score = 80.1 bits (196), Expect = 2e-12
 Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
 Frame = -2

Query: 1003 AMSRIHVMSQASRHARRLYVGGLPSETSKEAIVELFNCKVK--GSFHSG---VVLDVHVN 839
            AM    +  QA+RHARR+YVGGLP   +++ +   FN  +   G   +G    VL+V++N
Sbjct: 226  AMQPQAMTQQATRHARRVYVGGLPPTANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYIN 285

Query: 838  QEESYAIVEFFSVEEASQAMKLGTIYLEGAQLVIRRPNDYNARLDPYHVPDLP 680
             ++ +A VE  SVEEAS AM L  I  EGA + +RRP DYN  L     P  P
Sbjct: 286  HDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQP 338