BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014043
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316220.1| high mobility group family [Populus trichoca...   103   2e-20
ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 i...   102   3e-20
ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 i...   102   3e-20
ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-l...   100   1e-19
ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula] gi...    99   4e-19

>ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
           gi|222865260|gb|EEF02391.1| high mobility group family
           [Populus trichocarpa]
          Length = 176

 Score =  103 bits (256), Expect = 2e-20
 Identities = 50/57 (87%), Positives = 51/57 (89%)
 Frame = +2

Query: 116 SAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSRVEKAPYEAKAGKRKSEY 286
           SAFFVFLEEFRK YK EHPN KAVSAVGKAGGEKWKSLS  EKAPYEAKA KRKS+Y
Sbjct: 61  SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDY 117


>ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
           vinifera]
          Length = 156

 Score =  102 bits (254), Expect = 3e-20
 Identities = 49/57 (85%), Positives = 51/57 (89%)
 Frame = +2

Query: 116 SAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSRVEKAPYEAKAGKRKSEY 286
           SAFFVFLEEFRK YK EHPN KAVSAVGKAGGEKWKSLS  +KAPYEAKA KRKS+Y
Sbjct: 61  SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAAKRKSDY 117


>ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
           vinifera] gi|147854340|emb|CAN83423.1| hypothetical
           protein VITISV_023376 [Vitis vinifera]
          Length = 166

 Score =  102 bits (254), Expect = 3e-20
 Identities = 49/57 (85%), Positives = 51/57 (89%)
 Frame = +2

Query: 116 SAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSRVEKAPYEAKAGKRKSEY 286
           SAFFVFLEEFRK YK EHPN KAVSAVGKAGGEKWKSLS  +KAPYEAKA KRKS+Y
Sbjct: 61  SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAAKRKSDY 117


>ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
          Length = 169

 Score =  100 bits (249), Expect = 1e-19
 Identities = 49/57 (85%), Positives = 51/57 (89%)
 Frame = +2

Query: 116 SAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSRVEKAPYEAKAGKRKSEY 286
           SAFFVFLEEFRK YK E+PN KAVSAVGKAGGEKWKSLS  EKAPYEAKA KRK+EY
Sbjct: 60  SAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEY 116


>ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
           gi|355498308|gb|AES79511.1| HMG1/2-like protein
           [Medicago truncatula] gi|388511215|gb|AFK43669.1|
           unknown [Medicago truncatula]
          Length = 170

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = +2

Query: 116 SAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSRVEKAPYEAKAGKRKSEY 286
           SAFFVFLE+FRKT+K E+PN KAVSAVGKAGGEKWKSL++ EKAPYEAKA KRK EY
Sbjct: 56  SAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEY 112