BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014002
         (633 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...    79   1e-17
gb|AFJ66197.1| hypothetical protein 7G9.16 [Boechera stricta]          87   2e-15
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            66   3e-15
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    66   3e-15
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...    86   4e-15

>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score = 79.3 bits (194), Expect(3) = 1e-17
 Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = -3

Query: 250 VKHALFDMDDNTSLGPDELNV-FFKHCWSMVGENFTNAILNVFNTGHLPRGVNSTILCLI 74
           VK+ LF MD + + G D  NV FFK  W+++G++  +AIL+ F TG +P+ +N T + L+
Sbjct: 126 VKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLL 185

Query: 73  PKISNPSRVEEYRPITCCNIIYR 5
           PK  N + V+ +RPI CC++IY+
Sbjct: 186 PKEVNVTSVKNFRPIACCSVIYK 208



 Score = 28.5 bits (62), Expect(3) = 1e-17
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 390 QVSTHQLVIDEVIGYYKKLLGSSSEN 313
           ++  H L+ +E+ G+Y KL+GSS ++
Sbjct: 69  RIDKHNLIKEEIRGFYLKLMGSSVDS 94



 Score = 27.3 bits (59), Expect(3) = 1e-17
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -2

Query: 563 AEMKMYGELAKAEILELK---QKNSNDWFLDGDQGTAYFFNSIKGKRNGNAIWSLVSSSG 393
           AE      L K   +E K   QK+  +W   GD  T +F    K +R  N I  L++  G
Sbjct: 8   AEKICLSSLEKWSTIEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDG 67

Query: 392 VK 387
            +
Sbjct: 68  TR 69


>gb|AFJ66197.1| hypothetical protein 7G9.16 [Boechera stricta]
          Length = 671

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = -3

Query: 265 IGTQLVKHALFDMDDNTSLGPDELNV-FFKHCWSMVGENFTNAILNVFNTGHLPRGVNST 89
           +  + +KH LF M  N S GPD     FF+  W+++G  F  A  + F  G +PRGVN+T
Sbjct: 411 VSPEEIKHTLFSMPKNKSSGPDGFTPEFFQASWAIIGPEFVIAFQSYFLHGFMPRGVNAT 470

Query: 88  ILCLIPKISNPSRVEEYRPITCCNIIYR 5
            L LIPK+  P+ + +YRPI CCN+IY+
Sbjct: 471 TLTLIPKVEGPTTLTDYRPIACCNVIYK 498


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 65.9 bits (159), Expect(3) = 3e-15
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = -3

Query: 250 VKHALFDMDDNTSLGPDELNV-FFKHCWSMVGENFTNAILNVFNTGHLPRGVNSTILCLI 74
           +K A   +  N + GPD  +V FF+  WS++G     AI   F++G L +  N+T L LI
Sbjct: 312 IKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLI 371

Query: 73  PKISNPSRVEEYRPITCCNIIYR 5
           PK SN   + E+RPI+C N +Y+
Sbjct: 372 PKTSNACTISEFRPISCLNTLYK 394



 Score = 37.0 bits (84), Expect(3) = 3e-15
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 539 LAKAEILELKQKNSNDWFLDGDQGTAYFFNSIKGKRNGNAIWSLVSSSGV 390
           L+ AE     Q++   WF +GD  T YF   +  +++ N I SLV S+G+
Sbjct: 204 LSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGL 253



 Score = 24.3 bits (51), Expect(3) = 3e-15
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 387 VSTHQLVIDEVIGYYKKLLGS 325
           + + Q ++D  + YY++LLGS
Sbjct: 255 IDSQQGILDHCVTYYERLLGS 275


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score = 65.9 bits (159), Expect(3) = 3e-15
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = -3

Query: 250 VKHALFDMDDNTSLGPDELNV-FFKHCWSMVGENFTNAILNVFNTGHLPRGVNSTILCLI 74
           +K A   +  N + GPD  +V FF+  WS++G     AI   F++G L +  N+T L LI
Sbjct: 312 IKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLI 371

Query: 73  PKISNPSRVEEYRPITCCNIIYR 5
           PK SN   + E+RPI+C N +Y+
Sbjct: 372 PKTSNACTISEFRPISCLNTLYK 394



 Score = 37.0 bits (84), Expect(3) = 3e-15
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 539 LAKAEILELKQKNSNDWFLDGDQGTAYFFNSIKGKRNGNAIWSLVSSSGV 390
           L+ AE     Q++   WF +GD  T YF   +  +++ N I SLV S+G+
Sbjct: 204 LSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGL 253



 Score = 24.3 bits (51), Expect(3) = 3e-15
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 387 VSTHQLVIDEVIGYYKKLLGS 325
           + + Q ++D  + YY++LLGS
Sbjct: 255 IDSQQGILDHCVTYYERLLGS 275


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 977

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = -3

Query: 250 VKHALFDMDDNTSLGPDELNV-FFKHCWSMVGENFTNAILNVFNTGHLPRGVNSTILCLI 74
           +K  +F M  + SLGPD     F+K  W ++GE F  AI + F  G LP+GVNSTIL LI
Sbjct: 573 IKRVVFSMPKDKSLGPDGYRTEFYKATWDIIGEEFVLAIKSFFEKGFLPKGVNSTILALI 632

Query: 73  PKISNPSRVEEYRPITCCNIIYR 5
           PK      +++YRPI+CCN+IY+
Sbjct: 633 PKKLEEIEMKDYRPISCCNVIYK 655