BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013061
         (1194 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   112   2e-22
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   111   3e-22
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    99   2e-18
ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumi...    94   9e-17
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    93   2e-16

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  112 bits (280), Expect = 2e-22
 Identities = 103/314 (32%), Positives = 146/314 (46%), Gaps = 9/314 (2%)
 Frame = +2

Query: 17  GWLMTVHQNSEVQLFNPF*RSLLCLPPLTEFPGVQGILMRGKKGGVPNLVYSITRLNSPD 196
           GWL+ + +  E+ L NP  RS + LPPL+ FP V    +R     V    Y++ R +S D
Sbjct: 95  GWLLILDEAPEIFLLNPLTRSKVHLPPLSTFPNV----VRFNFADV-GREYAL-RTSSGD 148

Query: 197 NYYLSLSYIRDMYIYMVVKSSSSVTTGAIIMAIQGIQRTLAFYRIGGDQETWTPVTLDKW 376
            Y  SL  +RD +I   + SSS    G+  +A+  + +T          ++WT   L+  
Sbjct: 149 VYTRSLKKMRDSFIKKTILSSSP-ANGSDFIAVVILNQTGDLALCRKSDDSWT--FLEDA 205

Query: 377 SCFFCDVTYYQGNFYAVHNSGYVVV--VRGLETPETIPCIEQIISGPPGKVAHRHPSYIL 550
             +  DV +++G FYAV+  G + V  V G     +I  + Q   G           Y++
Sbjct: 206 QSYAEDVIFHRGLFYAVNKYGSIAVCDVSGSSPRVSIIEMPQQFGG--------DLQYLV 257

Query: 551 ESSGDLLIVLRNIVEDKDRNTDNMLQIPPQKTVGFQVYKLDFGSPNKWIEIQSLGDCAXX 730
           ES  +LL+V R +    D   D    I   +T  FQV +LD  +P +W  + SLGD A  
Sbjct: 258 ESGEELLLVTRYLDLTYDVEPDQTSLI--YRTTRFQVCRLDLKAP-RWEVVSSLGDRALF 314

Query: 731 XXXXXXXXXXXXXXXXXKPNCIYFT------NEQGFGG-QDMGIFNLEDGSINKFLYPSE 889
                            K NCIY+T      N  G GG QD+GIFNLEDGSI   L  S 
Sbjct: 315 LGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEP-LPCSH 373

Query: 890 TLLVMPLPIWFAPN 931
             +  P P+W  PN
Sbjct: 374 FRIRWPPPLWVTPN 387


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  111 bits (278), Expect = 3e-22
 Identities = 103/314 (32%), Positives = 146/314 (46%), Gaps = 9/314 (2%)
 Frame = +2

Query: 17  GWLMTVHQNSEVQLFNPF*RSLLCLPPLTEFPGVQGILMRGKKGGVPNLVYSITRLNSPD 196
           GWL+ + +  E+ L NP  RS + LPPL+ FP V    +R     V    Y++ R +S D
Sbjct: 95  GWLLILDEAPEIFLLNPLTRSKVHLPPLSTFPNV----VRFNFADV-GREYAL-RTSSGD 148

Query: 197 NYYLSLSYIRDMYIYMVVKSSSSVTTGAIIMAIQGIQRTLAFYRIGGDQETWTPVTLDKW 376
            Y  SL  +RD +I   + SSS    G+  +A+  + +T          ++WT   L+  
Sbjct: 149 VYTRSLKKMRDSFIKKTILSSSP-ANGSDFIAVVILNQTGDLALCRKSDDSWT--FLEDA 205

Query: 377 SCFFCDVTYYQGNFYAVHNSGYVVV--VRGLETPETIPCIEQIISGPPGKVAHRHPSYIL 550
             +  DV +++G FYAV+  G + V  V G     +I  + Q   G           Y++
Sbjct: 206 QSYSEDVIFHRGLFYAVNKYGSIAVCDVSGSSPRVSIIEMPQQFGG--------DLQYLV 257

Query: 551 ESSGDLLIVLRNIVEDKDRNTDNMLQIPPQKTVGFQVYKLDFGSPNKWIEIQSLGDCAXX 730
           ES  +LL+V R +    D   D    I   +T  FQV +LD  +P +W  + SLGD A  
Sbjct: 258 ESGEELLLVTRYLDLTYDVEXDQTSLI--YRTTRFQVCRLDSKAP-RWEVVSSLGDRALF 314

Query: 731 XXXXXXXXXXXXXXXXXKPNCIYFT------NEQGFGG-QDMGIFNLEDGSINKFLYPSE 889
                            K NCIY+T      N  G GG QD+GIFNLEDGSI   L  S 
Sbjct: 315 LGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEP-LPCSH 373

Query: 890 TLLVMPLPIWFAPN 931
             +  P P+W  PN
Sbjct: 374 FRIRWPPPLWVTPN 387


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 99.4 bits (246), Expect = 2e-18
 Identities = 88/318 (27%), Positives = 144/318 (45%), Gaps = 13/318 (4%)
 Frame = +2

Query: 17  GWLMTVHQNSEVQLFNPF*RSLLCLPPLTEFPGVQGILMR--GKKGGVPNLVYSITRLNS 190
           GWLM +     + L NP  R+ L LPPL+ FP V        G++  + NL+        
Sbjct: 98  GWLMILDDTPTILLINPLTRAKLSLPPLSSFPNVISFNYSDIGREYALRNLL-------- 149

Query: 191 PDNYYLSLSYIRDMYIYMVVKSSSSV-TTGAIIMAIQGIQRTLAFYRIGGDQETWTPVTL 367
            +   +SL  +RD +I  VV SSS +     +++AI      LA+ R G   ++W+ V  
Sbjct: 150 GERVTVSLRQMRDSFIRKVVLSSSPLKDNNFVVIAILNQTDDLAYCRNG--DKSWSLV-- 205

Query: 368 DKWSCFFCDVTYYQGNFYAVHNSGYVVVVRGLETPETIPCIEQIISGPPGKVAHRHPSYI 547
           +    F  DV +  G FYAV+ +G +V+         +  +E        + A     Y+
Sbjct: 206 ENARSFCEDVIFVNGMFYAVNKAGQIVICDISSDSPRVSFME------TPRQAGGDMQYL 259

Query: 548 LESSGDLLIVLRNIVEDKDRNTDNMLQIPPQKTVGFQVYKLDFGSPNKWIEIQSLGDCAX 727
           + S  +LL+V R +  + + +  +M      +T+ F+V++LD+  P +W+ + +LGD A 
Sbjct: 260 VNSGDELLLVTRYLDLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGP-QWLRMSTLGDKAL 318

Query: 728 XXXXXXXXXXXXXXXXXXKPNCIYFTNEQ-------GFGGQDMGIFNLEDGSINKF-LYP 883
                               NCIY+T++         FG  D+GIF L D +I     YP
Sbjct: 319 FIGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYP 378

Query: 884 SE--TLLVMPLPIWFAPN 931
               + L    P+W +PN
Sbjct: 379 RNFTSPLQWSPPLWVSPN 396


>ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]
           gi|449485151|ref|XP_004157083.1| PREDICTED: F-box
           protein SKIP23-like [Cucumis sativus]
          Length = 392

 Score = 93.6 bits (231), Expect = 9e-17
 Identities = 94/320 (29%), Positives = 144/320 (45%), Gaps = 15/320 (4%)
 Frame = +2

Query: 17  GWLMTVHQNSEVQLFNPF*RSLLCLPPLTEFPGVQGILMRGKKGGVPNLVYSITRLNSPD 196
           GWL  V +   + L NPF R+ L LPPL+ FP V  +     + G   L+    R  +  
Sbjct: 93  GWLTIVDETPPILLLNPFTRAKLWLPPLSTFPNV--VSFDYSRVGREYLI----RTPTGH 146

Query: 197 NYYLSLSYIRDMYIYMVVKSSS-SVTTGAIIMAIQGIQRTLAFYRIGGDQETWTPVTLDK 373
            Y  +L  +RD ++  +V SSS S     + +AI      LAF R GG   +WT V    
Sbjct: 147 IYTRNLRQMRDSFVKKIVLSSSPSNPNDFLAVAILNHSGDLAFCRSGGG--SWTFVDDAP 204

Query: 374 WSCFFCDVTYYQGNFYAVHNSGYVVV--VRGLETPETIPCIEQIISGPPGKVAHRHPSYI 547
             C   DV Y  G FYAV   G V +  +RG  +  ++   E+ ++G           Y+
Sbjct: 205 SDCE--DVIYSDGVFYAVDKYGVVSLMDLRGSRSQVSLVATERQLAG--------DIQYL 254

Query: 548 LESSGDLLIVLRNIVEDKDRNTDNMLQIPPQKTVGFQVYKLDFGSPNKWIEIQSLGDCAX 727
           ++   +LL+V R +    D   D ++ +   +TV F+V+++++  P +W ++++L + A 
Sbjct: 255 VKLGQELLLVSRYLDIVNDGMEDELIPV-MYRTVRFEVFRMEWEGP-RWEKVENLNEMAL 312

Query: 728 XXXXXXXXXXXXXXXXXXKPNCIYFTN--------EQGFGGQDMGIFNLEDGSINKFLYP 883
                               NCIY+T+        EQG    DMGIF L D S     Y 
Sbjct: 313 FVGGNSSMAFSAADFGEISGNCIYYTDDYSDSDYQEQG-EEPDMGIFRLCDESFEPLPYY 371

Query: 884 S----ETLLVMPLPIWFAPN 931
           S        ++P PIW  PN
Sbjct: 372 SGGSHSRRRLLP-PIWVTPN 390


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 92.8 bits (229), Expect = 2e-16
 Identities = 95/328 (28%), Positives = 135/328 (41%), Gaps = 23/328 (7%)
 Frame = +2

Query: 17  GWLMTVHQNSEVQLFNPF*RSLLCLPPLTEFPGVQGILMRGKKGGVPNLVYSITRLN-SP 193
           GWL+ +  +  + + NP  R  + LP ++ FP V             N+      +N   
Sbjct: 97  GWLIILDDSPSILVINPLTRRKIHLPAISSFPNVVSF-------DYANVGREYLLVNPQG 149

Query: 194 DNYYLSLSYIRDMYIYMVVKSSSSVTTGA---IIMAIQGIQRTLAFYRIGGDQETWTPVT 364
           +    SL  +RD +I  VV SSS +       + MAI      LA+ + G   E W  V 
Sbjct: 150 ERNTASLRQMRDGFIKKVVMSSSPLEKKGDFFVAMAILCSTGDLAYCKNG--DECWNIV- 206

Query: 365 LDKWSCFFCDVTYYQGNFYAVHNSGYVVV---------VRGLETPETIPCIEQIISGPPG 517
            +    F  DV Y+ G FYAV+ +G +VV         V  +ETP  I    Q       
Sbjct: 207 -ENSRSFSEDVIYFNGLFYAVNKAGQIVVCDVNGNSPKVSFIETPRQIGGDMQ------- 258

Query: 518 KVAHRHPSYILESSGDLLIVLRNIVEDKDRNTDNMLQIPPQKTVGFQVYKLDFGSPNKWI 697
                   Y++ S   LL+V R +  D D   D  +     KT  F+V+KLD   P +W 
Sbjct: 259 --------YLVSSGDGLLLVTRYL--DLDVEFDIFI----YKTARFEVFKLDLNGP-RWE 303

Query: 698 EIQSLGDCAXXXXXXXXXXXXXXXXXXXKPNCIYFTNEQG-------FGGQDMGIFNLED 856
            + SLGD                       +CIY+T++          G  D+GIF L D
Sbjct: 304 RVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSD 363

Query: 857 GSINKF-LYP--SETLLVMPLPIWFAPN 931
           GSI     YP  S + L  P P+W +PN
Sbjct: 364 GSIEPLPCYPRNSYSRLQWPPPLWISPN 391