BLASTX nr result

ID: Coptis23_contig00012839 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012839
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38018.3| unnamed protein product [Vitis vinifera]               60   1e-07
ref|XP_002274534.1| PREDICTED: DNA replication licensing factor ...    60   1e-07
dbj|BAD88098.1| putative replication licensing factor MCM4 [Oryz...    57   2e-07
gb|EEE54765.1| hypothetical protein OsJ_02146 [Oryza sativa Japo...    57   2e-07
gb|EEC70839.1| hypothetical protein OsI_02336 [Oryza sativa Indi...    57   2e-07

>emb|CBI38018.3| unnamed protein product [Vitis vinifera]
          Length = 834

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = -3

Query: 255 EVQLGGPSTHTXXXXXXLKKQSS-AEVHLTDLRNALSTLASEGFIVVQGDTIKWI 94
           ++QLGGPS         LKKQSS +E HL DLRNAL+TLASEGF+ V GD++K I
Sbjct: 780 KMQLGGPSMRLLELLEELKKQSSCSEAHLNDLRNALATLASEGFVSVHGDSVKRI 834


>ref|XP_002274534.1| PREDICTED: DNA replication licensing factor MCM4 [Vitis vinifera]
          Length = 840

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = -3

Query: 255 EVQLGGPSTHTXXXXXXLKKQSS-AEVHLTDLRNALSTLASEGFIVVQGDTIKWI 94
           ++QLGGPS         LKKQSS +E HL DLRNAL+TLASEGF+ V GD++K I
Sbjct: 786 KMQLGGPSMRLLELLEELKKQSSCSEAHLNDLRNALATLASEGFVSVHGDSVKRI 840


>dbj|BAD88098.1| putative replication licensing factor MCM4 [Oryza sativa Japonica
           Group]
          Length = 911

 Score = 57.0 bits (136), Expect(2) = 2e-07
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = -3

Query: 255 EVQLGGPSTHTXXXXXXLKKQSSAEVHLTDLRNALSTLASEGFIVVQGDTIK 100
           ++QLGGPS         ++KQSS EVHL DLR AL TL +EG +V+ GD++K
Sbjct: 809 KMQLGGPSVRMIELLEEIRKQSSMEVHLHDLRGALGTLMTEGAVVIHGDSVK 860



 Score = 22.7 bits (47), Expect(2) = 2e-07
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 293 ENLLSAA*NIIMEKCNLEDP 234
           +NL++A  N++MEK  L  P
Sbjct: 796 DNLVAATRNLVMEKMQLGGP 815


>gb|EEE54765.1| hypothetical protein OsJ_02146 [Oryza sativa Japonica Group]
          Length = 862

 Score = 57.0 bits (136), Expect(2) = 2e-07
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = -3

Query: 255 EVQLGGPSTHTXXXXXXLKKQSSAEVHLTDLRNALSTLASEGFIVVQGDTIK 100
           ++QLGGPS         ++KQSS EVHL DLR AL TL +EG +V+ GD++K
Sbjct: 809 KMQLGGPSVRMIELLEEIRKQSSMEVHLHDLRGALGTLMTEGAVVIHGDSVK 860



 Score = 22.7 bits (47), Expect(2) = 2e-07
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 293 ENLLSAA*NIIMEKCNLEDP 234
           +NL++A  N++MEK  L  P
Sbjct: 796 DNLVAATRNLVMEKMQLGGP 815


>gb|EEC70839.1| hypothetical protein OsI_02336 [Oryza sativa Indica Group]
          Length = 195

 Score = 57.0 bits (136), Expect(2) = 2e-07
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = -3

Query: 255 EVQLGGPSTHTXXXXXXLKKQSSAEVHLTDLRNALSTLASEGFIVVQGDTIK 100
           ++QLGGPS         ++KQSS EVHL DLR AL TL +EG +V+ GD++K
Sbjct: 142 KMQLGGPSVRMIELLEEIRKQSSMEVHLHDLRGALGTLMTEGAVVIHGDSVK 193



 Score = 22.7 bits (47), Expect(2) = 2e-07
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 293 ENLLSAA*NIIMEKCNLEDP 234
           +NL++A  N++MEK  L  P
Sbjct: 129 DNLVAATRNLVMEKMQLGGP 148


Top