BLASTX nr result

ID: Coptis23_contig00012188 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012188
         (531 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001078384.1| protein rotundifolia like 12 [Arabidopsis th...    65   6e-09
ref|XP_003606700.1| DVL9 [Medicago truncatula] gi|355507755|gb|A...    64   1e-08
ref|XP_002863136.1| hypothetical protein ARALYDRAFT_332982 [Arab...    64   1e-08
ref|XP_002324968.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-08
ref|XP_003597386.1| hypothetical protein MTR_2g097570 [Medicago ...    59   4e-07

>ref|NP_001078384.1| protein rotundifolia like 12 [Arabidopsis thaliana]
           gi|42822053|tpg|DAA02281.1| TPA_exp: DVL10 [Arabidopsis
           thaliana] gi|332657874|gb|AEE83274.1| protein
           rotundifolia like 12 [Arabidopsis thaliana]
          Length = 55

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = +1

Query: 205 SRFGNRCLTMAKQQRARFYILRRCIAMLLCWQAHAIRD 318
           +RFG+RCL MAKQQR R YILRRC++MLLCW  H+I D
Sbjct: 18  TRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 55


>ref|XP_003606700.1| DVL9 [Medicago truncatula] gi|355507755|gb|AES88897.1| DVL9
           [Medicago truncatula]
          Length = 102

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
 Frame = +1

Query: 127 SPLTSRSYIVPSSRSINNIMDSSRSTSR----FGNRCLTMAKQQRARFYILRRCIAMLLC 294
           SPL  +S+   SS + NN  + SRS S+     G +C  +AK+Q+ARFYI+RRC+AML+C
Sbjct: 37  SPLLLKSFSQKSSSTSNNSGNLSRSYSQKNPSIGKKCTNIAKEQKARFYIMRRCVAMLVC 96

Query: 295 WQAH 306
           W  H
Sbjct: 97  WHKH 100


>ref|XP_002863136.1| hypothetical protein ARALYDRAFT_332982 [Arabidopsis lyrata subsp.
           lyrata] gi|297308970|gb|EFH39395.1| hypothetical protein
           ARALYDRAFT_332982 [Arabidopsis lyrata subsp. lyrata]
          Length = 51

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = +1

Query: 193 SRSTSRFGNRCLTMAKQQRARFYILRRCIAMLLCWQAHAIRD 318
           +R TS FG+RCL MAKQQR R YILRRC++MLLCW  H+I D
Sbjct: 11  NRKTS-FGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 51


>ref|XP_002324968.1| predicted protein [Populus trichocarpa] gi|222866402|gb|EEF03533.1|
           predicted protein [Populus trichocarpa]
          Length = 59

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +1

Query: 211 FGNRCLTMAKQQRARFYILRRCIAMLLCWQAHAIRD 318
           F  RCL+MAKQQ+ RFYIL RCI+MLLCW  HAIRD
Sbjct: 24  FRRRCLSMAKQQKTRFYILGRCISMLLCWHDHAIRD 59


>ref|XP_003597386.1| hypothetical protein MTR_2g097570 [Medicago truncatula]
           gi|355486434|gb|AES67637.1| hypothetical protein
           MTR_2g097570 [Medicago truncatula]
          Length = 86

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 14/72 (19%)
 Frame = +1

Query: 133 LTSRSYIVPSSRSINNIMDSSRSTSR--------------FGNRCLTMAKQQRARFYILR 270
           L SRS    SS S ++++ SS S+S+               G +C  +AK+Q+ARFYI+R
Sbjct: 12  LFSRSSSTRSSTSNSSLLRSSSSSSKCNLQRSFSQKNPSSIGRKCTNLAKEQKARFYIMR 71

Query: 271 RCIAMLLCWQAH 306
           RC+AML+CW  H
Sbjct: 72  RCVAMLVCWHKH 83


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