BLASTX nr result
ID: Coptis23_contig00011701
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00011701
(1822 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3... 551 e-154
ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|2... 518 e-144
ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis tha... 514 e-143
ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|A... 510 e-142
ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group] g... 502 e-139
>ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like
[Vitis vinifera] gi|297738654|emb|CBI27899.3| unnamed
protein product [Vitis vinifera]
Length = 421
Score = 551 bits (1421), Expect = e-154
Identities = 294/423 (69%), Positives = 338/423 (79%), Gaps = 1/423 (0%)
Frame = -2
Query: 1677 MARLLRNPFSLKQYLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXDENLSKKDL 1498
MARLLRN SL+ L A + R +LGTS+Q NF +ENLSKK+L
Sbjct: 1 MARLLRNASSLRHSLFAVEGFRKGVLGTSSQFCNFSSKGRRRSKSDGSDSNEENLSKKEL 60
Query: 1497 ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1318
AL+QA+DQIT +FGKG+IMWLGR+ S ++VPVVSTGSF+LD+ LGIGGLPKGRVVEIYGP
Sbjct: 61 ALRQALDQITTSFGKGSIMWLGRSVSSKHVPVVSTGSFALDIVLGIGGLPKGRVVEIYGP 120
Query: 1317 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 1138
EASGKTTLALHVIAE+QK GGYCVFVDAEHALDP+LAEAIGV T+NLLLSQPD GEQALS
Sbjct: 121 EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLSQPDCGEQALS 180
Query: 1137 LVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 958
LVDTLIRSG ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240
Query: 957 ILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVGSQVQV 781
ILIF NQ+R+KLSTFG F GP EVT GGNALKFYASVRLN+KRIGLVKKGEET+GSQV V
Sbjct: 241 ILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQVLV 300
Query: 780 KIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNGQNFCGRDA 601
K+VKNKHAPPF+TAQFELEFGKGI RESEIVELG KHKFI+KGGGA Y +NGQ+F G+DA
Sbjct: 301 KVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSYNGQSFRGKDA 360
Query: 600 LKRYLAENDNXXXXXXXXXXXXLIHPGTDKVKVPETDAPEEDPKLEIVSPDTVEDDLVSA 421
+K++L++N++ L+ T+K K E +A +ED V PDT +++ V+A
Sbjct: 361 IKQFLSQNESEREELMRKLREKLVGE-TNKEKELEAEAVDEDIAEGTVPPDTTDEE-VTA 418
Query: 420 LEA 412
+EA
Sbjct: 419 VEA 421
>ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1|
predicted protein [Populus trichocarpa]
Length = 418
Score = 518 bits (1333), Expect = e-144
Identities = 273/419 (65%), Positives = 323/419 (77%)
Frame = -2
Query: 1677 MARLLRNPFSLKQYLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXDENLSKKDL 1498
MARLLRN SL++ L+A + R +LGTSTQI NF +EN+SKK+L
Sbjct: 1 MARLLRNASSLRRALVAPEGIRRGVLGTSTQICNFATKGKRKSKSDGSESGEENMSKKEL 60
Query: 1497 ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1318
AL+QA+DQIT+ FGKGAIMW GR+ +P+NVPVVSTGSF+LD+ALG GG PKGRVVEI+GP
Sbjct: 61 ALQQALDQITSQFGKGAIMWFGRSEAPKNVPVVSTGSFALDIALGCGGFPKGRVVEIFGP 120
Query: 1317 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 1138
EASGKTTLALHVIAE+QK GGYCVFVDAEHALD SLA+AIGV TENLLLSQPD GEQALS
Sbjct: 121 EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180
Query: 1137 LVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 958
LVDTLIRSG ALVPK ELDGEMGDAHMAMQARLMSQALRKLSHSLS SQT
Sbjct: 181 LVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLSQSQT 240
Query: 957 ILIFTNQIRSKLSTFGAFGPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVGSQVQVK 778
IL+F NQ+R+KLSTFG GP EVT GGNALKFYASVRLN++R+G +KKGEET G+QVQVK
Sbjct: 241 ILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQVQVK 300
Query: 777 IVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNGQNFCGRDAL 598
IVKNK APPF+T QFELEFGKGISRESEI+EL +KHK I K G++Y NG+ + G++A
Sbjct: 301 IVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKK-SGSFYDCNGKKYHGKEAF 359
Query: 597 KRYLAENDNXXXXXXXXXXXXLIHPGTDKVKVPETDAPEEDPKLEIVSPDTVEDDLVSA 421
K +LA ND+ L+ T + E + + +P EI+SPD+ ++++ +A
Sbjct: 360 KEFLAHNDDVQEELMMKLREKLLEGETGQELGDE--STDGEPTQEIISPDSTDEEVAAA 416
>ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis thaliana]
gi|209572665|sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA
repair protein recA homolog 3, mitochondrial; AltName:
Full=Recombinase A homolog 3; Flags: Precursor
gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis
thaliana] gi|330251794|gb|AEC06888.1| DNA repair protein
recA-like 3 [Arabidopsis thaliana]
Length = 430
Score = 514 bits (1325), Expect = e-143
Identities = 273/416 (65%), Positives = 324/416 (77%), Gaps = 1/416 (0%)
Frame = -2
Query: 1677 MARLLRNPFSLKQYLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXDENLSKKDL 1498
MAR+LRN +SL+ L ++++ R +++GTS Q+ F +E +SKK++
Sbjct: 1 MARILRNVYSLRSSLFSSELLRRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEI 60
Query: 1497 ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1318
AL+QA+DQIT++FGKG+IM+LGR SPRNVPV STGSF+LD+ALG+GGLPKGRVVEIYGP
Sbjct: 61 ALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGP 120
Query: 1317 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 1138
EASGKTTLALHVIAE+QK GG CVFVDAEHALD SLA+AIGV TENLLLSQPD GEQALS
Sbjct: 121 EASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180
Query: 1137 LVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 958
LVDTLIRSG ALVPKGEL+GEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181 LVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240
Query: 957 ILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVGSQVQV 781
+LIF NQ+RSKLSTFG F GP EVT GGNALKFYAS+RLN+KRIGL+KKGEET GSQV V
Sbjct: 241 LLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSV 300
Query: 780 KIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNGQNFCGRDA 601
KIVKNK APPFRTAQFELEFGKGI + +EI++L IKHKFI K G +Y NG+N+ G++A
Sbjct: 301 KIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAK-NGTFYNLNGKNYHGKEA 359
Query: 600 LKRYLAENDNXXXXXXXXXXXXLIHPGTDKVKVPETDAPEEDPKLEIVSPDTVEDD 433
LKR+L +N++ LI K E+++ EED +VSPD +D+
Sbjct: 360 LKRFLKQNESDQEELMKKLQDKLIADEAAD-KETESESEEEDSLRVVVSPDNTDDE 414
>ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|AES65456.1| RecA [Medicago
truncatula]
Length = 424
Score = 510 bits (1313), Expect = e-142
Identities = 278/428 (64%), Positives = 323/428 (75%), Gaps = 6/428 (1%)
Frame = -2
Query: 1677 MARLLRNPFSLKQ----YLLATQVC-RHAILGTSTQISNFXXXXXXXXXXXXXXXXDENL 1513
MARLLR+ F L + + L T+ C ++ +LGTS +S +EN+
Sbjct: 1 MARLLRSTFFLNRSFFHHHLPTRFCSKNGVLGTSQVLSFSTNKGKKRSKSDGSDSGEENM 60
Query: 1512 SKKDLALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVV 1333
SKKDLAL+QAMDQIT+TFGKG+IMWLGRT SP+NVPVVSTGSF+LD+ALGI GLPKGRVV
Sbjct: 61 SKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVV 120
Query: 1332 EIYGPEASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSG 1153
EI+GPEASGKTTLALHVIAE+QK GGYC F+DAEHALD SLAE+IGV TENLLLSQPD G
Sbjct: 121 EIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCG 180
Query: 1152 EQALSLVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 973
EQALSLVDTLIRSG ALVPKGELDGEMGDAHMAMQARLMSQALRKL HSL
Sbjct: 181 EQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSL 240
Query: 972 SLSQTILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVG 796
SLSQ ILIF NQ+RSK+STFG F GP EVT GGNALKFY+SVRLN+KR+G VKKGEETVG
Sbjct: 241 SLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETVG 300
Query: 795 SQVQVKIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNGQNF 616
SQV VK+VKNKHAPPF+TAQFELEFGKGI RE+EI+EL IKHKFI K G++Y++NG+N+
Sbjct: 301 SQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKK-SGSFYEYNGKNY 359
Query: 615 CGRDALKRYLAENDNXXXXXXXXXXXXLIHPGTDKVKVPETDAPEEDPKLEIVSPDTVED 436
G+DALK +L D L + V E+ D E++SPD+ ++
Sbjct: 360 HGKDALKSHLINGDGLQDLTTKLREKLL---NAETETVSESQEMVGDVTEEMLSPDSTDE 416
Query: 435 DLVSALEA 412
+ EA
Sbjct: 417 ETAVVAEA 424
>ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group]
gi|56784510|dbj|BAD82767.1| putative recA protein [Oryza
sativa Japonica Group] gi|56784869|dbj|BAD82109.1|
putative recA protein [Oryza sativa Japonica Group]
gi|113534640|dbj|BAF07023.1| Os01g0901200 [Oryza sativa
Japonica Group] gi|222619696|gb|EEE55828.1| hypothetical
protein OsJ_04434 [Oryza sativa Japonica Group]
Length = 429
Score = 502 bits (1292), Expect = e-139
Identities = 263/381 (69%), Positives = 303/381 (79%), Gaps = 11/381 (2%)
Frame = -2
Query: 1521 ENLSKKDLALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKG 1342
ENLSKKDLAL QA+DQIT+ FGKGAIMWLGR+ R VPVVSTGSFSLDLALG GGLPKG
Sbjct: 60 ENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKG 119
Query: 1341 RVVEIYGPEASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQP 1162
RV+E+YGPEASGKTTLALHVIAE+QKHGGYC FVDAEHALDP+LAE+IGV T NLLLSQP
Sbjct: 120 RVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQP 179
Query: 1161 DSGEQALSLVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLS 982
D GEQALSLVDTLIRSG ALVPK ELDGEMGDAH+A+QARLMSQALRKLS
Sbjct: 180 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRKLS 239
Query: 981 HSLSLSQTILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEE 805
HSLSLSQTIL+F NQIRSK++TFG F GP EVTSGGNALKFYASVR+N+KRIGLVKKGEE
Sbjct: 240 HSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEE 299
Query: 804 TVGSQVQVKIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNG 625
T+GSQV VKIVKNKHAPPF+TAQFELEFGKGI R SE++ELG+KHK + K GGA+Y FN
Sbjct: 300 TIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSFNE 359
Query: 624 QNFCGRDALKRYLAENDNXXXXXXXXXXXXLIHPGTDKVKVPETDAPEED---------- 475
+++ G+DALK YL EN++ T+ K+ ET AP++
Sbjct: 360 ESYRGKDALKSYLNENESIAKELE-----------TNLRKLMETQAPKKQEDEGDFLSDL 408
Query: 474 PKLEIVSPDTVEDDLVSALEA 412
P+ + + + E++L + +EA
Sbjct: 409 PEESLATETSSEEELAAVIEA 429