BLASTX nr result

ID: Coptis23_contig00006288 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006288
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271921.1| PREDICTED: uncharacterized protein LOC100263...   101   6e-20
ref|XP_002302391.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
ref|XP_002510056.1| conserved hypothetical protein [Ricinus comm...    94   9e-18
ref|XP_002313192.1| predicted protein [Populus trichocarpa] gi|2...    93   2e-17
emb|CAN65537.1| hypothetical protein VITISV_018586 [Vitis vinifera]    89   4e-16

>ref|XP_002271921.1| PREDICTED: uncharacterized protein LOC100263462 [Vitis vinifera]
          Length = 349

 Score =  101 bits (252), Expect = 6e-20
 Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
 Frame = -2

Query: 509 TDRALQCECVEESKQHSPVSVLEDSPFRKHIRWCSRTDKKEIPSVPNFIQPLRVTDDLIL 330
           TD  LQ   +++ +Q SPVSVLE  P  +   +     ++EI S  +F    R T++   
Sbjct: 152 TDTNLQWSFMDD-RQLSPVSVLETLPSNQAQHFFIAR-QEEILSTSSFNLQKRTTENSTA 209

Query: 329 SASLWDLLGNSSWNKQGSGGNRDIRKLTGTSSSSQYRKTKRVLEQTDQLLFDCVREALQT 150
           SA  W+LL       Q   G   + ++ G + SSQ  KTKR+++ T Q+ FDC +EA++ 
Sbjct: 210 SAFPWELL------IQSHPGIAKLEEIFGFAGSSQCLKTKRIMQHTKQVSFDCEKEAIEI 263

Query: 149 HGKDEQVNN---LLGAEDIGKMICEQICFWAKQCGNVTNITQLIRS 21
           HGK   V       G E+  K ICE IC+W KQCG+VT+IT+LI S
Sbjct: 264 HGKKSNVQKNEEFPGDEEPSKNICEHICYWEKQCGDVTSITKLINS 309


>ref|XP_002302391.1| predicted protein [Populus trichocarpa] gi|222844117|gb|EEE81664.1|
           predicted protein [Populus trichocarpa]
          Length = 418

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
 Frame = -2

Query: 515 TITDRALQCECVEESKQHSPVSVLED------SPFRKHIRWCSRTDKKEIPSVPNFIQPL 354
           T  DR LQ   +E+S+Q SP SVLE       SPF+      S T ++E P       P 
Sbjct: 169 TAADRKLQQRGIEDSRQLSPASVLEGIPSHGRSPFQNSNTEDSSTAEEENPLKTGVHLPK 228

Query: 353 RVTDDLILSASLWDLLGNSSWNKQGSGGNRDIRKLTGTSSSSQYRKTKRVLEQTDQLLFD 174
           R+T+D ILSASL  +L  S   K       + ++L  +  S QY K+K VL+QT QLLFD
Sbjct: 229 RLTEDCILSASLRKVLFYSPNEKPICAEATERQELVQSYFSPQYLKSKMVLQQTKQLLFD 288

Query: 173 CVREALQTHGKDEQV----NNLLGAEDIGKMICEQICFWAKQCGNVTNITQLIRSSLCES 6
            V+E ++T G++ +        LG+E++G +I E+   W KQ GN +N+T+L+   +  S
Sbjct: 289 YVKEIVETKGREMKQQCHHKQFLGSEELGSIIGEKTRPWDKQSGNESNLTKLLNLDVLNS 348


>ref|XP_002510056.1| conserved hypothetical protein [Ricinus communis]
           gi|223550757|gb|EEF52243.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 368

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 68/179 (37%), Positives = 106/179 (59%), Gaps = 11/179 (6%)
 Frame = -2

Query: 506 DRALQCECVEESKQHSPVSVLEDSPFRKHIRWCSRTDKKEI-PSVPNFIQPLRVTDDLIL 330
           +R L+ +C+EES+Q SPVSVLE++         S+  K ++  S  +F+ P +VT+D IL
Sbjct: 151 NRKLRWQCIEESRQLSPVSVLEEAASHS----ASQLHKYKVKDSKSSFLFPKKVTEDSIL 206

Query: 329 SASLWDLLGNSSWNKQGS-GGNRDIRKL---TGTSSSSQYRKT-KRVLEQTDQLLFDCVR 165
           SASL  +L  S   K+ +  G  +I++L      ++SS+Y K+    L+QT QLLFDCVR
Sbjct: 207 SASLRKVLFQSENQKKPTLAGVSEIQELVQSNNNNASSRYLKSNSSALQQTRQLLFDCVR 266

Query: 164 EALQTHGKDE----QVNNLLGAEDIGK-MICEQICFWAKQCGNVTNITQLIRSSLCESV 3
           E +    + E    Q    L +E +GK +I ++I  W KQ G  +N+ +L++S L +SV
Sbjct: 267 EIVDNQERKEKPHQQQQEYLASEYLGKHVIGDKIKCWGKQSGEASNLAELLQSDLLDSV 325


>ref|XP_002313192.1| predicted protein [Populus trichocarpa] gi|222849600|gb|EEE87147.1|
           predicted protein [Populus trichocarpa]
          Length = 350

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
 Frame = -2

Query: 506 DRALQCECVEESKQHSPVSVLEDSPFRKHIRWCSRTDKKEIPSVPNFIQPLRVTDDLILS 327
           D   Q EC+EE++Q SPVSVL + P    +       + +  S  + +      +D +LS
Sbjct: 153 DINFQWECMEENEQLSPVSVLNELPSINKVSRFLPKQEGKAASASSTVLSRNAEEDNMLS 212

Query: 326 ASLWDLLGNSSWNKQGSGGNRDIRKLTGTSSSSQYRKTKRVLEQTDQLLFDCVREALQT- 150
           A L DLL  S   K    G  D++++ G + S Q+ K  RVL Q  QLLFDCV EA++  
Sbjct: 213 AFLCDLLVKSLIEKHSLAGFADLQEVVGPAFS-QHLKNNRVLRQNMQLLFDCVNEAIEVH 271

Query: 149 ---HGKDEQVNNLLGAEDIGKMICEQICFWAKQ 60
              H + +        +++GK+ICEQIC W KQ
Sbjct: 272 RRMHRRKQHAQEFKSLQELGKIICEQICSWGKQ 304


>emb|CAN65537.1| hypothetical protein VITISV_018586 [Vitis vinifera]
          Length = 298

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
 Frame = -2

Query: 353 RVTDDLILSASLWDLLGNSSWNKQGSGGNRDIRKLTGTSSSSQYRKTKRVLEQTDQLLFD 174
           R T++   SA  W+LL       Q   G   + ++ G + SSQ  KTKR+++ T Q+ FD
Sbjct: 151 RTTENSTASAFPWELL------IQSHPGIAKLEEIFGFAGSSQCLKTKRIMQHTKQVSFD 204

Query: 173 CVREALQTHGKDEQVNN---LLGAEDIGKMICEQICFWAKQCGNVTNITQLIRS 21
           C +EA++ HGK   V       G E+  K ICE IC+W KQCG+VT+IT+LI S
Sbjct: 205 CEKEAIEIHGKKSNVQKNEEFPGDEEPSKNICEHICYWEKQCGDVTSITKLINS 258


Top