BLASTX nr result

ID: Coptis23_contig00001000 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001000
         (1146 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263239.1| PREDICTED: F-box/kelch-repeat protein OR23-l...   431   e-118
emb|CBI37083.3| unnamed protein product [Vitis vinifera]              413   e-113
emb|CAN79913.1| hypothetical protein VITISV_027398 [Vitis vinifera]   403   e-110
ref|XP_002300788.1| predicted protein [Populus trichocarpa] gi|2...   393   e-107
ref|XP_002307636.1| predicted protein [Populus trichocarpa] gi|2...   389   e-106

>ref|XP_002263239.1| PREDICTED: F-box/kelch-repeat protein OR23-like [Vitis vinifera]
          Length = 429

 Score =  431 bits (1109), Expect = e-118
 Identities = 231/386 (59%), Positives = 263/386 (68%), Gaps = 10/386 (2%)
 Frame = +2

Query: 17   TSVCSSSNSQVEGQTLALT-------TLIPNLPNDXXXXXXXXXXXXHHSRLKPTCKSWK 175
            TS  SSS+S    +TLALT       TLIP LPND              +RLK   KSWK
Sbjct: 11   TSSVSSSSSPPIDETLALTLTLTLNLTLIPGLPNDVSALILSMIPYSCLARLKSISKSWK 70

Query: 176  HFFSSKPLNFSLRQKFH-SHILCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLT 352
             F SSK L  SLRQ  H S +LCLFPQDP+I+ PFLFDPK LAW P+PP+P N  +YGL 
Sbjct: 71   LFLSSKTL-ISLRQNNHQSQLLCLFPQDPAIANPFLFDPKTLAWCPLPPLPINPYVYGLC 129

Query: 353  NFISIAFNYHLYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVSLSPMLSARGSFAC 532
            NF SI+   +LYV+GGSLFD RSFP+DRPS S+S++RF+  T  W  LSPMLS RGSFAC
Sbjct: 130  NFTSISLGPNLYVLGGSLFDTRSFPLDRPSPSSSVFRFNFLTYSWELLSPMLSPRGSFAC 189

Query: 533  XXXXXXXXXXXXX--SRHAMXXXXXXXXXXXXXXXXXXXXXAAGSRMSSVERYDVEKNEW 706
                           SRH M                     AAGSRMSSVERYDVEK+EW
Sbjct: 190  VALPNSDQIIVAGGGSRHTMFG-------------------AAGSRMSSVERYDVEKDEW 230

Query: 707  VEMDGLPRFRAGCVGFLIGNGEEMEFWVMGGYGESRTVSGVFPVDEYYRDGVVLELKSGG 886
            V +DGLPRFRAGCVGFLIGNGEE EFWVMGGYGESRTVSGVFPVDEYYRD VV+ELK GG
Sbjct: 231  VSLDGLPRFRAGCVGFLIGNGEEKEFWVMGGYGESRTVSGVFPVDEYYRDAVVMELKKGG 290

Query: 887  KWREIENMWEEGERRRLGNVVVLDGEDGEEPGIFMLDGADIFRYNISSNRWQKESSVPRT 1066
            KWRE+ +MWE GER RLG +VV+D E G  P IFMLDG++IFRY ++SNRW KES VPR 
Sbjct: 291  KWRELGDMWEAGERMRLGKIVVVDDEVGGAPAIFMLDGSEIFRYCMTSNRWLKESCVPRK 350

Query: 1067 ALVDFCFGFAALDGELHVLSPLYTID 1144
            A  D  FGF  LDGEL+V++ +  ID
Sbjct: 351  ASQDMSFGFVVLDGELYVITHMTGID 376


>emb|CBI37083.3| unnamed protein product [Vitis vinifera]
          Length = 377

 Score =  413 bits (1062), Expect = e-113
 Identities = 212/337 (62%), Positives = 242/337 (71%), Gaps = 3/337 (0%)
 Frame = +2

Query: 143  SRLKPTCKSWKHFFSSKPLNFSLRQKFH-SHILCLFPQDPSISPPFLFDPKNLAWRPIPP 319
            +RLK   KSWK F SSK L  SLRQ  H S +LCLFPQDP+I+ PFLFDPK LAW P+PP
Sbjct: 8    ARLKSISKSWKLFLSSKTL-ISLRQNNHQSQLLCLFPQDPAIANPFLFDPKTLAWCPLPP 66

Query: 320  MPCNSQLYGLTNFISIAFNYHLYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVSLS 499
            +P N  +YGL NF SI+   +LYV+GGSLFD RSFP+DRPS S+S++RF+  T  W  LS
Sbjct: 67   LPINPYVYGLCNFTSISLGPNLYVLGGSLFDTRSFPLDRPSPSSSVFRFNFLTYSWELLS 126

Query: 500  PMLSARGSFACXXXXXXXXXXXXX--SRHAMXXXXXXXXXXXXXXXXXXXXXAAGSRMSS 673
            PMLS RGSFAC               SRH M                     AAGSRMSS
Sbjct: 127  PMLSPRGSFACVALPNSDQIIVAGGGSRHTMFG-------------------AAGSRMSS 167

Query: 674  VERYDVEKNEWVEMDGLPRFRAGCVGFLIGNGEEMEFWVMGGYGESRTVSGVFPVDEYYR 853
            VERYDVEK+EWV +DGLPRFRAGCVGFLIGNGEE EFWVMGGYGESRTVSGVFPVDEYYR
Sbjct: 168  VERYDVEKDEWVSLDGLPRFRAGCVGFLIGNGEEKEFWVMGGYGESRTVSGVFPVDEYYR 227

Query: 854  DGVVLELKSGGKWREIENMWEEGERRRLGNVVVLDGEDGEEPGIFMLDGADIFRYNISSN 1033
            D VV+ELK GGKWRE+ +MWE GER RLG +VV+D E G  P IFMLDG++IFRY ++SN
Sbjct: 228  DAVVMELKKGGKWRELGDMWEAGERMRLGKIVVVDDEVGGAPAIFMLDGSEIFRYCMTSN 287

Query: 1034 RWQKESSVPRTALVDFCFGFAALDGELHVLSPLYTID 1144
            RW KES VPR A  D  FGF  LDGEL+V++ +  ID
Sbjct: 288  RWLKESCVPRKASQDMSFGFVVLDGELYVITHMTGID 324


>emb|CAN79913.1| hypothetical protein VITISV_027398 [Vitis vinifera]
          Length = 517

 Score =  403 bits (1036), Expect = e-110
 Identities = 225/409 (55%), Positives = 258/409 (63%), Gaps = 33/409 (8%)
 Frame = +2

Query: 17   TSVCSSSNSQVEGQTLALT-------TLIPNLPNDXXXXXXXXXXXXHHSRLKPTCKSWK 175
            TS  SSS+S    +TLALT       TLIP LPND              +RLK   KSWK
Sbjct: 15   TSSVSSSSSPPIDETLALTLTLTLNLTLIPGLPNDVSALILSMIPYSCLARLKSISKSWK 74

Query: 176  HFFSSKPLNFSLRQKFH-SHILCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLT 352
             F SSK L  SLRQ  H S +LCLFPQDP+I+ PFLFDPK LAW P+PP+P N  +YGL 
Sbjct: 75   LFLSSKTL-ISLRQNNHQSQLLCLFPQDPAIANPFLFDPKTLAWCPLPPLPINPYVYGLC 133

Query: 353  NFISIAFNYHLYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVSLSPMLSARGSFAC 532
            NF SI+   +LYV+GGSLFD RSFP+DRPS S+S++RF+  T  W  LSPMLS RGSFAC
Sbjct: 134  NFTSISLGPNLYVLGGSLFDTRSFPLDRPSPSSSVFRFNFLTYSWELLSPMLSPRGSFAC 193

Query: 533  XXXXXXXXXXXXX--SRHAMXXXXXXXXXXXXXXXXXXXXXAAGSRMSSVERYDVEKNEW 706
                           SRH M                     AAGSRMSSVERYDVEK+EW
Sbjct: 194  VALPNSDQIIVAGGGSRHTMFG-------------------AAGSRMSSVERYDVEKDEW 234

Query: 707  VEMDGLPRFRAGCVGFLIGNGEEMEFWVMGGYGESRTVSGVFPVDEYYRDGVVLELKSGG 886
            V +DGLPRFRAGCVGFLIGNGEE EFWVMGGYGESRTVSGVFPVDEYYRD VV+ELK GG
Sbjct: 235  VSLDGLPRFRAGCVGFLIGNGEEKEFWVMGGYGESRTVSGVFPVDEYYRDAVVMELKKGG 294

Query: 887  KWREIENMWEEGERRRLGNVVVLDGEDGEEPGIFMLDGADIFRYNISSNR---------- 1036
            KWRE+ +MWE GER RLG +VV+D E G  P IFMLDG++IF+  +  +           
Sbjct: 295  KWRELGDMWEAGERMRLGKIVVVDDEVGGAPAIFMLDGSEIFQVGVLVSEHLGILATVGA 354

Query: 1037 -------------WQKESSVPRTALVDFCFGFAALDGELHVLSPLYTID 1144
                          Q ES VPR A  D  FGF  LDGEL+V++ +  ID
Sbjct: 355  ASAFRLEPGIPPLGQLESCVPRKASQDMSFGFVVLDGELYVITHMTGID 403


>ref|XP_002300788.1| predicted protein [Populus trichocarpa] gi|222842514|gb|EEE80061.1|
            predicted protein [Populus trichocarpa]
          Length = 414

 Score =  393 bits (1009), Expect = e-107
 Identities = 204/377 (54%), Positives = 253/377 (67%), Gaps = 6/377 (1%)
 Frame = +2

Query: 14   MTSVCSSSNSQVEGQTLALTTLIPNLPNDXXXXXXXXXXXXHHSRLKPTCKSWKHFFSSK 193
            M +  SSS SQ+  Q     TLIP LPND            HH+R+KPTCKSW  F SS 
Sbjct: 1    METYASSSLSQL--QINETQTLIPGLPNDIASLILSLIPYSHHARVKPTCKSWHTFLSST 58

Query: 194  PLNFSLRQ--KFHSHILCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLTNFISI 367
               FSLR+  +  +H+L +FPQDPSIS P+LFDP+NLAWRP+P MPCN  +YGL NF SI
Sbjct: 59   EALFSLRRHPRRSNHLLIIFPQDPSISAPYLFDPQNLAWRPLPRMPCNPNVYGLCNFTSI 118

Query: 368  AFNYHLYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVSLSPMLSARGSFAC--XXX 541
            +   +LYV+GGSLFD RSFPMDRPS ++S++RF+     W  L PMLS RGSFAC     
Sbjct: 119  SMGPNLYVLGGSLFDTRSFPMDRPSPTSSVFRFNFVDFLWEKLCPMLSPRGSFACAAVPD 178

Query: 542  XXXXXXXXXXSRHAMXXXXXXXXXXXXXXXXXXXXXAAGSRMSSVERYDVEKNEWVEMDG 721
                      SRHA                      AAGSR+SSVERYDV K EWV ++G
Sbjct: 179  SGQIIVAGGGSRHA-------------------WFGAAGSRISSVERYDVGKGEWVAIEG 219

Query: 722  LPRFRAGCVGFLIGNGEEMEFWVMGGYGESRTVSGVFPVDEYYRDGVVLELKSG--GKWR 895
            LPR+RAGCVGFL G+G+E EFWVMGGYGESRT+SG+FPVDEYY+D VV++LK    GKWR
Sbjct: 220  LPRYRAGCVGFLSGDGDEREFWVMGGYGESRTISGIFPVDEYYKDAVVMDLKKSGCGKWR 279

Query: 896  EIENMWEEGERRRLGNVVVLDGEDGEEPGIFMLDGADIFRYNISSNRWQKESSVPRTALV 1075
            E+ +MW +  R RLG +VV++ ++G  P +FMLD  +IFRY+++SN WQ+ES VPR A  
Sbjct: 280  EVGDMWSDAGRGRLGKIVVVEEDEG-RPAVFMLDENEIFRYDMASNSWQRESIVPRKAPH 338

Query: 1076 DFCFGFAALDGELHVLS 1126
            +   GFA LDGELHV++
Sbjct: 339  NSSCGFAVLDGELHVMT 355


>ref|XP_002307636.1| predicted protein [Populus trichocarpa] gi|222857085|gb|EEE94632.1|
            predicted protein [Populus trichocarpa]
          Length = 422

 Score =  389 bits (999), Expect = e-106
 Identities = 201/382 (52%), Positives = 250/382 (65%), Gaps = 14/382 (3%)
 Frame = +2

Query: 29   SSSNSQVEGQTLALTTLIPNLPNDXXXXXXXXXXXXHHSRLKPTCKSWKHFFSSKPLNFS 208
            +SS+SQ+  Q     TLIP +PND            HHSR+KPTCKSW  F SS    F 
Sbjct: 5    ASSSSQL--QINETQTLIPGIPNDIASQILSMIPYSHHSRIKPTCKSWHIFLSSTKTLFL 62

Query: 209  LRQKFH--SHILCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLTNFISIAFNYH 382
            LR      +H+L +FPQDP IS P+LFDP+NLAWRP+PPMPCN  +YGL NF S++   +
Sbjct: 63   LRHNLRHSNHLLIIFPQDPFISLPYLFDPQNLAWRPLPPMPCNPHVYGLCNFTSVSMGPN 122

Query: 383  LYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVSLSPMLSARGSFACXXXXXXXXXX 562
            LYV+GGSLFD RS+P+DRPS ++S++RF+     W  L PM+S RGSFAC          
Sbjct: 123  LYVLGGSLFDTRSYPIDRPSPTSSVFRFNFVDFLWEKLCPMISPRGSFACVAVPDWDQII 182

Query: 563  XXX--SRHAMXXXXXXXXXXXXXXXXXXXXXAAGSRMSSVERYDVEKNEWVEMDGLPRFR 736
                 SRH                       AAGSR+SSVERYDV K+EWV +DGLPR+R
Sbjct: 183  VAGGGSRHTWFG-------------------AAGSRISSVERYDVGKDEWVAIDGLPRYR 223

Query: 737  AGCVGFLIGNGEEMEFWVMGGYGESRTVSGVFPVDEYYRDGVVLELKSG--GKWREIENM 910
            AGC GFL GNGEE EFWV+GGYGESRT+SG+FPVDEYY+D VV++L+    GKWRE+ +M
Sbjct: 224  AGCAGFLSGNGEEKEFWVVGGYGESRTISGIFPVDEYYKDAVVMDLEKNGCGKWREVGDM 283

Query: 911  WEEGERRRLGNVVVLDGEDGEE--------PGIFMLDGADIFRYNISSNRWQKESSVPRT 1066
            W    R RLG +VV++ E   E        P +FMLDG +IFRY+++SN WQKESSVPR 
Sbjct: 284  WGVAWRGRLGKIVVVEEEAEAEGLGVKQGRPVVFMLDGDEIFRYDMASNSWQKESSVPRK 343

Query: 1067 ALVDFCFGFAALDGELHVLSPL 1132
            A  +  FGF  LDGELHV++P+
Sbjct: 344  APYNSSFGFVVLDGELHVMTPV 365


Top