BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000821
         (1670 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   629   e-178
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   608   e-171
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     600   e-169
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     599   e-169
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           592   e-166

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  629 bits (1623), Expect = e-178
 Identities = 316/564 (56%), Positives = 411/564 (72%), Gaps = 8/564 (1%)
 Frame = +2

Query: 2    AERMNRTLLERARCLLSNASLGKEYWADAVSMACYLYNRSPVPAIDCRTPYEVWSGNPAD 181
            AERMN+TLLERARC+LSNA L + +WA+AVS ACYL NR P   I C+TP E+WSG  AD
Sbjct: 574  AERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAAD 633

Query: 182  YSILRVFGSTAYYHVRDSKLDPRAKKAIFLGFANGVKGYRLWCLEDHKFLVSRDVTFDET 361
            YS L+ FG TAYYHV + KL+PRAKK +F+G+ +GVKG+R+W   + + ++SR+V FDE+
Sbjct: 634  YSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDES 693

Query: 362  SVL-SFSKPEVAGQNG---ESIEVQATELELSDAADDWLDHDEVPNHGTTXXXXXXXXHP 529
             +L +  KP    + G   + +E Q  + E SD  +   + D+ P   T           
Sbjct: 694  PLLRTIVKPTTTSETGSLDKQVEFQVIQNE-SDLKEPE-EEDQEPQTETDIPESMPSDIH 751

Query: 530  QLVVADPRPQRQVKEVHKYGHEKPVKHYGQVDLVAYALNIEDD----EPDSFKEAVRDAH 697
            Q +  D RP+R           +P   YG  D+V YAL + ++    EP ++KEA+  + 
Sbjct: 752  QSIAQD-RPRRV--------GVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSD 802

Query: 698  YRDWLVAMQAEMESLDKNHTWDLVLLPKGKRTIGSKWVFRKKEVLPESDSTGYKARVVAK 877
               W  AM  EMESL KN TWDLV+ P G++ I  KWVF+KKE +  ++   YKARVVA+
Sbjct: 803  SEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVAR 862

Query: 878  GFSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMRQP 1057
            GF+Q+EGVDYNE+FSPVV+HTSIRVLL++VAH NLELEQLDVKTAFLHG+LEEEIYM QP
Sbjct: 863  GFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQP 922

Query: 1058 EGFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRGND 1237
            +GF V  KE++VCKL +SLYGLKQSPRQWYKRFD++M++  YTRS YDCCVY+ RL  + 
Sbjct: 923  DGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDS 982

Query: 1238 FIYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIVVS 1417
            FIYL+LYVDDMLIA+K   +I KLK  LS+EFEMKDLG A+KILGMEI RDR++R++ +S
Sbjct: 983  FIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLS 1042

Query: 1418 QKKYLQKVISRFGMENAKSVSTPLAGHFRLSAKFSPSSVEEQKHMANVPYASAVGSLMYA 1597
            Q+ Y+QKV++RFGM ++K + TP A +  L+A F+P S EE+++M+ VPYASAVGSLMYA
Sbjct: 1043 QRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYA 1102

Query: 1598 MVCTRPDISQAVSVVSRYMANPGK 1669
            MVCTRPD++ AVSVVSR+M  PG+
Sbjct: 1103 MVCTRPDLAHAVSVVSRFMGQPGR 1126


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  608 bits (1569), Expect = e-171
 Identities = 321/567 (56%), Positives = 407/567 (71%), Gaps = 11/567 (1%)
 Frame = +2

Query: 2    AERMNRTLLERARCLLSNASLGKEYWADAVSMACYLYNRSPVPAIDCRTPYEVWSGNPAD 181
            AERMNRT++ +ARCLLSNA L K++WA+AVS ACYL NRSP  AID +TP EVWSG+PA+
Sbjct: 803  AERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPAN 862

Query: 182  YSILRVFGSTAYYHVRDSKLDPRAKKAIFLGFANGVKGYRLWCLEDHKFLVSRDVTFDET 361
            YS LRVFG TAY HV + KL+PRA K IFLG+ +GVKGY+LWC E  K ++SR+V F E 
Sbjct: 863  YSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHE- 921

Query: 362  SVLSFSKPE--VAGQNGESIEVQATELELSDAA----DDWLDHDEVPNHGTTXXXXXXXX 523
            SV+   KP   V  ++ E   VQ   L  S  A    D  ++ DE     +         
Sbjct: 922  SVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQS- 980

Query: 524  HPQLVVADPRPQRQVKEVHKYGHEKPVKHYGQVDLVAYALNIEDD-----EPDSFKEAVR 688
             P+  +A  RP+R +K   +Y  E         ++VAYAL++ ++     EP ++ EA+ 
Sbjct: 981  -PKRSIAKDRPKRNIKPPQRYIEE--------ANIVAYALSVAEEIEGNAEPSTYSEAIV 1031

Query: 689  DAHYRDWLVAMQAEMESLDKNHTWDLVLLPKGKRTIGSKWVFRKKEVLPESDSTGYKARV 868
                  W+ AM  EMESL+KNHTW+LV LPK K+ I  KW+F++KE +  SD   YKAR+
Sbjct: 1032 SDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARL 1091

Query: 869  VAKGFSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYM 1048
            +AKG+SQ  G+D+N+VFSPVVKH+SIR LLS+VA  + ELEQ+DVKTAFLHG+LEE+IYM
Sbjct: 1092 IAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 1151

Query: 1049 RQPEGFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLR 1228
             QP+GFVV  KE+ VC+L +SLYGLKQSPRQWYKRFD+FM+  ++ RS YD CVY + + 
Sbjct: 1152 EQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD 1211

Query: 1229 GNDFIYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRI 1408
            G+  IYLLLYVDDMLIA+K   EI KLK+QLSSEFEMKDLG AKKILGMEI R R   ++
Sbjct: 1212 GS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKL 1270

Query: 1409 VVSQKKYLQKVISRFGMENAKSVSTPLAGHFRLSAKFSPSSVEEQKHMANVPYASAVGSL 1588
             +SQK Y++KV+ RF M +AK VSTPLA HFRLS+   P S  + ++M+ VPY+SAVGSL
Sbjct: 1271 YLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSL 1330

Query: 1589 MYAMVCTRPDISQAVSVVSRYMANPGK 1669
            MYAMVC+RPD+S A+SVVSRYMANPGK
Sbjct: 1331 MYAMVCSRPDLSHALSVVSRYMANPGK 1357


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  600 bits (1548), Expect = e-169
 Identities = 316/565 (55%), Positives = 402/565 (71%), Gaps = 9/565 (1%)
 Frame = +2

Query: 2    AERMNRTLLERARCLLSNASLGKEYWADAVSMACYLYNRSPVPAIDCRTPYEVWSGNPAD 181
            AERMNRT++ +ARC+LSNA L K++WA+AVS ACYL NRSP  AID +TP EVWSG+P +
Sbjct: 568  AERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTN 627

Query: 182  YSILRVFGSTAYYHVRDSKLDPRAKKAIFLGFANGVKGYRLWCLEDHKFLVSRDVTFDET 361
            YS LRVFG TAY HV + KL+PRA K IFLG+A+GVKGY+LWC E  K ++SR+V F E 
Sbjct: 628  YSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHE- 686

Query: 362  SVLSFSKPE--VAGQNGESIEVQATELELSDAADDWLDHDEVPNHGTTXXXXXXXXH--P 529
            SV+   KP   V  ++ E   VQ   L  S  A +  D     +            H  P
Sbjct: 687  SVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSP 746

Query: 530  QLVVADPRPQRQVKEVHKYGHEKPVKHYGQVDLVAYALNIEDD-----EPDSFKEAVRDA 694
            +  +A  +P+R +K   +Y  E  +        VAYAL++ +      EP ++ EA+   
Sbjct: 747  KRSIAKDKPKRNIKPPRRYIEEAKI--------VAYALSVAEKIEGNAEPSTYSEAIVSD 798

Query: 695  HYRDWLVAMQAEMESLDKNHTWDLVLLPKGKRTIGSKWVFRKKEVLPESDSTGYKARVVA 874
                W+ AM  EMESL+KNHTW+LV LPK K+ I  KW+F++KE +  SD   YKAR+VA
Sbjct: 799  DCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVA 858

Query: 875  KGFSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMRQ 1054
            KG+SQ  G+D+N+VFSPVVKH+SIR LL +VA  + ELEQ++VKTAFLHG+LEE+IYM Q
Sbjct: 859  KGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQ 918

Query: 1055 PEGFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRGN 1234
            PEGFVV  KE+ VC+L +SLYGLKQSPRQWYKRFD+FM+  ++  S YD CVY + + G+
Sbjct: 919  PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVDGS 978

Query: 1235 DFIYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIVV 1414
              IYLLLYVDDMLIA+K   EI+KLK+QLSSEFEMKDLG AKKILGMEI R+R   ++ +
Sbjct: 979  -VIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYL 1037

Query: 1415 SQKKYLQKVISRFGMENAKSVSTPLAGHFRLSAKFSPSSVEEQKHMANVPYASAVGSLMY 1594
            SQK Y++KV+ RF M +AK VSTPLA HFRLS+   P S  + ++M+ VPY+SAVGSLMY
Sbjct: 1038 SQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMY 1097

Query: 1595 AMVCTRPDISQAVSVVSRYMANPGK 1669
            AMVC RPD+S A+SVV+RYMANPGK
Sbjct: 1098 AMVCCRPDLSHALSVVNRYMANPGK 1122


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  599 bits (1544), Expect = e-169
 Identities = 315/566 (55%), Positives = 405/566 (71%), Gaps = 10/566 (1%)
 Frame = +2

Query: 2    AERMNRTLLERARCLLSNASLGKEYWADAVSMACYLYNRSPVPAIDCRTPYEVWSGNPAD 181
            AERMNRT++ +ARC+LSNASL K++WA+AVS ACYL NRSP  AID +TP EVWSG+PA+
Sbjct: 505  AERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPAN 564

Query: 182  YSILRVFGSTAYYHVRDSKLDPRAKKAIFLGFANGVKGYRLWCLEDHKFLVSRDVTFDET 361
            YS LRVFG TAY HV + KL+PR  K IFLG+ +GVKGY+LWC E  K ++SR+V F E 
Sbjct: 565  YSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHE- 623

Query: 362  SVLSFSKPE--VAGQNGESIEVQATELELSDAADDWLD---HDEVPNHGTTXXXXXXXXH 526
            S++   KP   V  ++ E + VQ   L  S  A +  D   + + P    +         
Sbjct: 624  SIMLHDKPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQS- 682

Query: 527  PQLVVADPRPQRQVKEVHKYGHEKPVKHYGQVDLVAYALNIEDD-----EPDSFKEAVRD 691
            P+  +A  RP+R  K   +Y  E         ++VAYAL++ ++     EP ++ +A+  
Sbjct: 683  PKRSIAKDRPKRNTKPPRRYIEE--------ANIVAYALSVAEEIEGNAEPSTYSDAIVS 734

Query: 692  AHYRDWLVAMQAEMESLDKNHTWDLVLLPKGKRTIGSKWVFRKKEVLPESDSTGYKARVV 871
                 W+ AM  EMESL+KNH+W+L  LPK K+ I  KW+F++KE +  SD   YKAR+V
Sbjct: 735  DDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLV 794

Query: 872  AKGFSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMR 1051
            AKG+SQ  G+D+N+VFSPVVKH+SIR LLS+VA  + ELEQ+DVKTAFLHG+LEE+IYM 
Sbjct: 795  AKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYME 854

Query: 1052 QPEGFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRG 1231
            QPEGFVV  KE+ VC+L +SLYGLKQSPRQWYKRFD+FM+  ++ RS YD CVY + + G
Sbjct: 855  QPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDG 914

Query: 1232 NDFIYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIV 1411
            +  IYLLLYVDDMLIA+K   EI KLK+QLSSEFEMKDLG AKKILGMEI R+R   ++ 
Sbjct: 915  S-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLY 973

Query: 1412 VSQKKYLQKVISRFGMENAKSVSTPLAGHFRLSAKFSPSSVEEQKHMANVPYASAVGSLM 1591
            +SQK Y++KV+ RF M +AK VST LA HFRLS+   P S  + ++M+ VPY+SAV SLM
Sbjct: 974  LSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLM 1033

Query: 1592 YAMVCTRPDISQAVSVVSRYMANPGK 1669
            YAMVC+RPD+S A+SVVSRYMANPGK
Sbjct: 1034 YAMVCSRPDLSHALSVVSRYMANPGK 1059


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  592 bits (1525), Expect = e-166
 Identities = 314/575 (54%), Positives = 401/575 (69%), Gaps = 19/575 (3%)
 Frame = +2

Query: 2    AERMNRTLLERARCLLSNASLGKEYWADAVSMACYLYNRSPVPAIDCRTPYEVWSGNPAD 181
            AERMNRT++ RARC+LS+A + K +WA+A S ACYL NRSP   ++ +TP EVWSG PAD
Sbjct: 590  AERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPAD 649

Query: 182  YSILRVFGSTAYYHVRDSKLDPRAKKAIFLGFANGVKGYRLWCLEDHKFLVSRDVTFDET 361
            YS L+VFG TAY HV + KL+PRA K +FLG+ +GVKGY+LW  E  K  +SR V F+E+
Sbjct: 650  YSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNES 709

Query: 362  SVLSFSKPE-----------------VAGQNGESIE-VQATELELSDAADDWLDHDEVPN 487
             + + S P                  V    G  +E V   +   +D ADD   HD+V  
Sbjct: 710  VMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDA-HDDVQQ 768

Query: 488  HGTTXXXXXXXXHPQLVVADPRPQRQVKEVHKYGHEKPVKHYGQVDLVAYALNIED-DEP 664
                           L +A  + +R  K   +   E  + +Y     ++ A  +E+  EP
Sbjct: 769  -----TPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYA----LSCAEQVENVHEP 819

Query: 665  DSFKEAVRDAHYRDWLVAMQAEMESLDKNHTWDLVLLPKGKRTIGSKWVFRKKEVLPESD 844
             ++KEAVR     +W+ AM  EM+SL+KN TW++V LPK K+TI  KW+F++KE L  S+
Sbjct: 820  ATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSE 879

Query: 845  STGYKARVVAKGFSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHG 1024
               YKAR+VA+G+SQ  GVDYN+VFSPVVKH+SIR  LS+VA  +LELEQLDVKTAFLHG
Sbjct: 880  PPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHG 939

Query: 1025 DLEEEIYMRQPEGFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDC 1204
            +LEE+IYM QPEGF+V  KE YVCKL RSLYGLKQSPRQW KRFD+FM+ H + RSKYD 
Sbjct: 940  ELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDS 999

Query: 1205 CVYFRRLRGNDFIYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEID 1384
            CVY + + G+  IYLLLYVDDMLIA+KS +EI KLK  LSSEF+MKDLG AKKILGMEI 
Sbjct: 1000 CVYIKHVNGSP-IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEIS 1058

Query: 1385 RDRKKRRIVVSQKKYLQKVISRFGMENAKSVSTPLAGHFRLSAKFSPSSVEEQKHMANVP 1564
            RDRK   + +SQ  Y++KV+ RF M+NAK+VSTP+A HF+LSA   PS+  E ++M+ VP
Sbjct: 1059 RDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVP 1118

Query: 1565 YASAVGSLMYAMVCTRPDISQAVSVVSRYMANPGK 1669
            Y+SAVGSLMYAMVC+RPD+S A+S+VSRYM+NPGK
Sbjct: 1119 YSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGK 1153