BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000765
         (589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003573350.1| PREDICTED: zinc finger CCCH domain-containin...    87   2e-15
ref|XP_003630250.1| Zinc finger CCCH domain-containing protein [...    82   5e-14
ref|XP_004148674.1| PREDICTED: zinc finger CCCH domain-containin...    81   1e-13
emb|CBI19970.3| unnamed protein product [Vitis vinifera]               78   1e-12
gb|ADZ04636.1| hypothetical protein [Oryza glaberrima]                 77   2e-12

>ref|XP_003573350.1| PREDICTED: zinc finger CCCH domain-containing protein 55-like
           [Brachypodium distachyon]
          Length = 931

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 51/181 (28%)
 Frame = -3

Query: 539 CKYFTSGNCREGTNCRYSHKG-----------------------EALDRPEG----RSAD 441
           C+ FT+G CR G +CR+ H+                        + +D  E     RS  
Sbjct: 225 CRDFTAGRCRRGLHCRFPHEDGGRREFDELYAADPRERYVHENKDFMDPREPNDYLRSRP 284

Query: 440 WRGH---NLGNQNLSHRSNRSADQCIDFLNGQCERGSSCRYVHDDYV------------- 309
            RGH       ++   R  RSADQC DF+ G+C RG++CRY HDD               
Sbjct: 285 SRGHYEEGTRERSEPRRDYRSADQCNDFVRGRCSRGANCRYAHDDSASHVGWRDDVREIA 344

Query: 308 -----PD---GSRHDTHKNNKTPCMFYASGRCRFGIRCSFSHDVEDLDGPKGRQGLNLGN 153
                PD   G+R +  + NK PC F+A GRCR G  C + H+    + P+ + GL   +
Sbjct: 345 HGRGGPDSSFGNRTEHRRENKKPCKFFAEGRCRRGQSCPYLHE----ETPQSQMGLGPPD 400

Query: 152 E 150
           E
Sbjct: 401 E 401


>ref|XP_003630250.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355524272|gb|AET04726.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 779

 Score = 82.4 bits (202), Expect = 5e-14
 Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
 Frame = -3

Query: 539 CKYFTSGNCREGTNCRYSHKG--------EALDRPEGRSADWRGHNLGNQNLSHRSNRSA 384
           C+ F  GNCR G++C + H          E+  RP+GR       N G+ +L++R  RS 
Sbjct: 139 CRDFAVGNCRRGSHCHFLHHDKQSYEDSRESRHRPDGRRYSNPREN-GDYSLTNR--RSN 195

Query: 383 DQCIDFLNGQCERGSSCRYVHDDY--------------------------VPDGSRHDTH 282
           + CI F  G+C  G SC+YVH D                              G +H  +
Sbjct: 196 EACIYFAKGRCRMGESCKYVHHDNSDGFDKILADESSSEREIDRRHIEQSFKQGDQHYPN 255

Query: 281 KNNKTPCMFYASGRCRFGIRCSFSHDVEDLDGPKGRQGLNLGNENNSR 138
            ++ TPC F+A G CR G  C FSHD +    P  R   +  N+   +
Sbjct: 256 HSSNTPCKFFALGNCRNGKDCRFSHDRQAFTSPGLRDDRSRSNQGEDQ 303



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
 Frame = -3

Query: 401 RSNRSADQCIDFLNGQCERGSSCRYVHDD-----------YVPDGSRHD----------T 285
           R  RSA  C DF  G C RGS C ++H D           + PDG R+           T
Sbjct: 131 RDGRSAQPCRDFAVGNCRRGSHCHFLHHDKQSYEDSRESRHRPDGRRYSNPRENGDYSLT 190

Query: 284 HKNNKTPCMFYASGRCRFGIRCSFSH 207
           ++ +   C+++A GRCR G  C + H
Sbjct: 191 NRRSNEACIYFAKGRCRMGESCKYVH 216


>ref|XP_004148674.1| PREDICTED: zinc finger CCCH domain-containing protein 38-like
           [Cucumis sativus]
          Length = 873

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 32/171 (18%)
 Frame = -3

Query: 539 CKYFTSGNCREGTNCRYSHKGEAL--------DRPEGRSADWRGHNLGNQNLSHRSNRSA 384
           C+ F SG CR G  C++ H+   +        +R  GRS     H+  +     RS RSA
Sbjct: 177 CREFVSGRCRRGNGCQFLHQDNQIMDDSWDSRNRKGGRSLRSTPHDFRDYP---RSGRSA 233

Query: 383 DQCIDFLNGQCERGSSCRYVHDDYVPD---GSRHDTHKNNK------------------- 270
            QC DF+ G+C RG+SC+Y HD    D   GS +D  ++ +                   
Sbjct: 234 AQCTDFVKGRCHRGASCKYPHDSAFHDLSRGSPNDISRDRENDRSKEAYFSRGEREPGNS 293

Query: 269 --TPCMFYASGRCRFGIRCSFSHDVEDLDGPKGRQGLNLGNENNSRGARKR 123
               C F+A+G CR G  C FSH  +    P+ +   +   ++     R+R
Sbjct: 294 SLVTCKFFAAGTCRNGKNCKFSHHSQPRASPERKSSTDRWEQDPFSDGRER 344


>emb|CBI19970.3| unnamed protein product [Vitis vinifera]
          Length = 994

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 51/182 (28%)
 Frame = -3

Query: 539 CKYFTSGNCREGTNCRYSHKGEALDRPEGRSADWRGHNLGNQNLSHRSNRSAD------- 381
           C+ F +G C  G+ CR+ H+     R  GRS   +  +  ++    R++R AD       
Sbjct: 315 CRDFVAGRCSRGSQCRFLHQDNLNYRDGGRSEIDQAESWESRQEHRRASRYADAEGPIDY 374

Query: 380 ------------------------------QCIDFLNGQCERGSSCRYVHDDYVPDG-SR 294
                                         +C DFL G+C RGSSC++ H     D   R
Sbjct: 375 PRDKVARGGYGNQYDGEKDVPVRNNSRSNVRCNDFLKGKCHRGSSCKFSHHGASGDRYDR 434

Query: 293 HDT-HKNNKTP-------CMFYASGRCRFGIRCSFSHDVEDLDGPKGRQ-----GLNLGN 153
           HD  H+  + P       C ++A G+C  G RC FSHD    D P+GR      G NL +
Sbjct: 435 HDRDHERKREPHRVGGILCKYFAMGKCFNGDRCRFSHDDPPCDSPEGRPRDGKWGHNLDD 494

Query: 152 EN 147
           EN
Sbjct: 495 EN 496


>gb|ADZ04636.1| hypothetical protein [Oryza glaberrima]
          Length = 953

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 54/188 (28%), Positives = 75/188 (39%), Gaps = 53/188 (28%)
 Frame = -3

Query: 539 CKYFTSGNCREGTNCRYSHK-GEALDRPEGRSADWRGHNLGNQNLS-------------- 405
           C+ F +G CR G+NCR+ H+ G      E    D R    G+QN                
Sbjct: 230 CRDFVAGRCRRGSNCRFPHEDGVRRQLDEHYPVDSR-ERYGHQNRDFMDPREQDDYLRSR 288

Query: 404 -----------------HRSNRSADQCIDFLNGQCERGSSCRYVHDDYV----------- 309
                             R  RS   C DF+ G+C RG++CRYVHDD             
Sbjct: 289 PLRGGHYDEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVHDDSTSHGGWRDEVRD 348

Query: 308 -------PD---GSRHDTHKNNKTPCMFYASGRCRFGIRCSFSHDVEDLDGPKGRQGLNL 159
                  PD   G+R +  + NK PC F+A+G CR G  C + H+    +  + + GL  
Sbjct: 349 NAIGRSGPDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCPYLHE----EASQSQMGLGA 404

Query: 158 GNENNSRG 135
            +E    G
Sbjct: 405 PDEPGYTG 412