BLASTX nr result
ID: Coptis23_contig00000734
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000734
(207 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF70460.1|AF240445_1 polyubiquitin [Populus tremula x Populu... 135 3e-30
ref|XP_002302153.1| predicted protein [Populus trichocarpa] gi|2... 135 3e-30
gb|ABK94272.1| unknown [Populus trichocarpa] 135 3e-30
ref|NP_564379.2| NEDD8-like protein RUB1 [Arabidopsis thaliana] ... 135 4e-30
ref|XP_002437367.1| hypothetical protein SORBIDRAFT_10g025670 [S... 135 4e-30
>gb|AAF70460.1|AF240445_1 polyubiquitin [Populus tremula x Populus tremuloides]
Length = 154
Score = 135 bits (341), Expect = 3e-30
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +1
Query: 1 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 180
KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA
Sbjct: 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 122
Query: 181 GKQLADDKT 207
GKQL DDKT
Sbjct: 123 GKQLGDDKT 131
Score = 71.2 bits (173), Expect = 8e-11
Identities = 32/53 (60%), Positives = 43/53 (81%)
Frame = +1
Query: 49 IKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 207
I VKTLTGK I +++E +D ID +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 3 IFVKTLTGKTITLEVESSDAIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 55
>ref|XP_002302153.1| predicted protein [Populus trichocarpa]
gi|224082516|ref|XP_002306725.1| predicted protein
[Populus trichocarpa] gi|118485172|gb|ABK94447.1|
unknown [Populus trichocarpa]
gi|222843879|gb|EEE81426.1| predicted protein [Populus
trichocarpa] gi|222856174|gb|EEE93721.1| predicted
protein [Populus trichocarpa]
Length = 154
Score = 135 bits (341), Expect = 3e-30
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +1
Query: 1 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 180
KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA
Sbjct: 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 122
Query: 181 GKQLADDKT 207
GKQL DDKT
Sbjct: 123 GKQLGDDKT 131
Score = 73.2 bits (178), Expect = 2e-11
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = +1
Query: 49 IKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 207
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 55
>gb|ABK94272.1| unknown [Populus trichocarpa]
Length = 154
Score = 135 bits (341), Expect = 3e-30
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +1
Query: 1 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 180
KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA
Sbjct: 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 122
Query: 181 GKQLADDKT 207
GKQL DDKT
Sbjct: 123 GKQLGDDKT 131
Score = 71.2 bits (173), Expect = 8e-11
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +1
Query: 49 IKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 207
I VKTLTGK I +++E +DTID +K ++ +KEGIPP QQRLI+AGKQL D +T
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKAKILDKEGIPPDQQRLIFAGKQLEDGRT 55
>ref|NP_564379.2| NEDD8-like protein RUB1 [Arabidopsis thaliana]
gi|302393813|sp|Q9SHE7.3|RUB1_ARATH RecName:
Full=Ubiquitin-NEDD8-like protein RUB1; Contains:
RecName: Full=Ubiquitin; Contains: RecName:
Full=NEDD8-like protein RUB1; AltName:
Full=Ubiquitin-related protein 1; Short=AtRUB1; Flags:
Precursor gi|6692129|gb|AAF24594.1|AC007654_10 T19E23.13
[Arabidopsis thaliana] gi|28973676|gb|AAO64156.1|
putative ubiquitin (AtRUB1) [Arabidopsis thaliana]
gi|29824269|gb|AAP04095.1| putative ubiquitin (AtRUB1)
[Arabidopsis thaliana] gi|110737109|dbj|BAF00506.1|
putative ubiquitin [Arabidopsis thaliana]
gi|312283039|dbj|BAJ34385.1| unnamed protein product
[Thellungiella halophila] gi|332193223|gb|AEE31344.1|
NEDD8-like protein RUB1 [Arabidopsis thaliana]
Length = 156
Score = 135 bits (339), Expect = 4e-30
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +1
Query: 1 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 180
KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLIYA
Sbjct: 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA 122
Query: 181 GKQLADDKT 207
GKQLADDKT
Sbjct: 123 GKQLADDKT 131
Score = 73.2 bits (178), Expect = 2e-11
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = +1
Query: 49 IKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 207
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 55
>ref|XP_002437367.1| hypothetical protein SORBIDRAFT_10g025670 [Sorghum bicolor]
gi|357123249|ref|XP_003563324.1| PREDICTED:
ubiquitin-NEDD8-like protein RUB2-like [Brachypodium
distachyon] gi|302393766|sp|P0C031.2|RUB2_ORYSJ RecName:
Full=Ubiquitin-NEDD8-like protein RUB2; Contains:
RecName: Full=Ubiquitin; Contains: RecName:
Full=NEDD8-like protein RUB2; AltName: Full=OsRUB2;
AltName: Full=Ubiquitin-related protein 2; Flags:
Precursor gi|51534981|dbj|BAD38105.1| polyubiquitin 2
[Oryza sativa Japonica Group]
gi|215692861|dbj|BAG88281.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218186299|gb|EEC68726.1| hypothetical protein
OsI_37226 [Oryza sativa Indica Group]
gi|218198663|gb|EEC81090.1| hypothetical protein
OsI_23921 [Oryza sativa Indica Group]
gi|241915590|gb|EER88734.1| hypothetical protein
SORBIDRAFT_10g025670 [Sorghum bicolor]
Length = 153
Score = 135 bits (339), Expect = 4e-30
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +1
Query: 1 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYA 180
KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLIYA
Sbjct: 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA 122
Query: 181 GKQLADDKT 207
GKQLADDKT
Sbjct: 123 GKQLADDKT 131
Score = 73.2 bits (178), Expect = 2e-11
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = +1
Query: 49 IKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 207
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 55