BLASTX nr result
ID: Coptis23_contig00000699
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000699
(2445 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277120.2| PREDICTED: DEAD-box ATP-dependent RNA helica... 865 0.0
emb|CAN67649.1| hypothetical protein VITISV_005080 [Vitis vinifera] 863 0.0
emb|CBI40505.3| unnamed protein product [Vitis vinifera] 861 0.0
ref|XP_003529893.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 855 0.0
ref|XP_002523364.1| dead box ATP-dependent RNA helicase, putativ... 852 0.0
>ref|XP_002277120.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Vitis
vinifera]
Length = 751
Score = 865 bits (2234), Expect = 0.0
Identities = 447/560 (79%), Positives = 487/560 (86%), Gaps = 5/560 (0%)
Frame = -2
Query: 2051 SKKDGRDSDLQKGRKQAILSS---DDDIETSIPSFTTFLNSESGEXXXXXDVELPKFKEV 1881
S+K R+SDL R+ ++S +D+ E SF L+ E E D + EV
Sbjct: 192 SRKQIRNSDLGYRREAHLVSEGEDEDEDEELKGSFKGLLSEEDSEEEEEEDDDDDDHDEV 251
Query: 1880 SPLRVSAMKDNT--HITPKISSGKTESYLSETRFDQCTISPLSLKGIKDAGYENMTVVQA 1707
S++ P+ S+GK++SYLSETRFDQC ISPLSLK IKDAGYE MTVVQ
Sbjct: 252 LKKNASSLFGAAAKEAVPRSSTGKSDSYLSETRFDQCPISPLSLKAIKDAGYEKMTVVQE 311
Query: 1706 ATLPVILKGKDVLAKARTGTGKTVAFLLPAIEVIVKSPPVDRDQKRPPINVLVVCPTREL 1527
ATLPVILKGKDVLAKA+TGTGKTVAFLLP+IE++VKSPP+ RDQKRPPI VLV+CPTREL
Sbjct: 312 ATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSPPISRDQKRPPIVVLVICPTREL 371
Query: 1526 ASQAAAEATKLLKYHPSIGVQIVIGGVRLALEQKRLQANPCQILVATPGRLKDHIENTAG 1347
ASQAAAEA LLKYHPS+GVQ+VIGG RLALEQKR+QANPCQILVATPGRLKDHIENTAG
Sbjct: 372 ASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLKDHIENTAG 431
Query: 1346 FATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEDVRQICHIAL 1167
FATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE+VRQICHIAL
Sbjct: 432 FATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIAL 491
Query: 1166 RRDHDFINTVEEGSEETHAQVRQMHLVAPLDKQFSLLYALLKDHMADDVDYKVLVFCTTA 987
+RDH+FINTV+EGSEETH+QVRQ H++APLDK F LLYALLKDH+ADDVDYKVLVFCTTA
Sbjct: 492 KRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLYALLKDHIADDVDYKVLVFCTTA 551
Query: 986 MVTRLVADLLGELKMNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVT 807
MVTRLVADLLGEL +NVREIHSRKPQ YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVT
Sbjct: 552 MVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVT 611
Query: 806 LVIQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEESFLSSVKDLPITKAPVPTIDP 627
LVIQVGLP+D+EQYIHRLGRTGRKGKEGQGILLLAPWEE FLS+ KDLPITKA P +DP
Sbjct: 612 LVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTAKDLPITKAEAPLVDP 671
Query: 626 DTRKKVERALSNVEMKNKEAAYQAWLGYYNSTKIVGRDKCRLVELANEFSRSMGLDTPPA 447
DTRKKVERALS VEMK+KEAAYQAWLGYYNS K VGRDK RLVELANEFSR+MGLD PPA
Sbjct: 672 DTRKKVERALSQVEMKSKEAAYQAWLGYYNSNKKVGRDKVRLVELANEFSRTMGLDNPPA 731
Query: 446 IAKLILGKMGLRNVPGLRTK 387
I KLILGKMGLRNVPGLR+K
Sbjct: 732 IPKLILGKMGLRNVPGLRSK 751
>emb|CAN67649.1| hypothetical protein VITISV_005080 [Vitis vinifera]
Length = 863
Score = 863 bits (2231), Expect = 0.0
Identities = 452/576 (78%), Positives = 490/576 (85%), Gaps = 8/576 (1%)
Frame = -2
Query: 2090 RKGQGLRGAVSSPSKK-----DGRDSDLQ---KGRKQAILSSDDDIETSIPSFTTFLNSE 1935
R G GLR P K+ +G D D KG + +LS +D E E
Sbjct: 303 RGGGGLRRGDRGPQKQAHLVSEGEDEDEDEELKGSFKGLLSEEDSEE-----------EE 351
Query: 1934 SGEXXXXXDVELPKFKEVSPLRVSAMKDNTHITPKISSGKTESYLSETRFDQCTISPLSL 1755
+ E+ K K S L +A K+ P+ S+GK++SYLSETRFDQC ISPLSL
Sbjct: 352 EEDDDDDDHDEVLK-KNASSLFGAAAKE---AVPRSSTGKSDSYLSETRFDQCPISPLSL 407
Query: 1754 KGIKDAGYENMTVVQAATLPVILKGKDVLAKARTGTGKTVAFLLPAIEVIVKSPPVDRDQ 1575
K IKDAGYE MTVVQ ATLPVILKGKDVLAKA+TGTGKTVAFLLP+IE++VKSPP+ RDQ
Sbjct: 408 KAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSPPISRDQ 467
Query: 1574 KRPPINVLVVCPTRELASQAAAEATKLLKYHPSIGVQIVIGGVRLALEQKRLQANPCQIL 1395
KRPPI VLV+CPTRELASQAAAEA LLKYHPS+GVQ+VIGG RLALEQKR+QANPCQIL
Sbjct: 468 KRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQANPCQIL 527
Query: 1394 VATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 1215
VATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF
Sbjct: 528 VATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 587
Query: 1214 SATVPEDVRQICHIALRRDHDFINTVEEGSEETHAQVRQMHLVAPLDKQFSLLYALLKDH 1035
SATVPE+VRQICHIAL+RDH+FINTV+EGSEETH+QVRQ H++APLDK F LLYALLKDH
Sbjct: 588 SATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLYALLKDH 647
Query: 1034 MADDVDYKVLVFCTTAMVTRLVADLLGELKMNVREIHSRKPQSYRTRVSDEFRKSKGLIL 855
+ADDVDYKVLVFCTTAMVTRLVADLLGEL +NVREIHSRKPQ YRTRVSDEFRKSKGLIL
Sbjct: 648 IADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRKSKGLIL 707
Query: 854 VTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEESFLSS 675
VTSDVSARGVDYPDVTLVIQVGLP+D+EQYIHRLGRTGRKGKEGQGILLLAPWEE FLS+
Sbjct: 708 VTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLLAPWEEFFLST 767
Query: 674 VKDLPITKAPVPTIDPDTRKKVERALSNVEMKNKEAAYQAWLGYYNSTKIVGRDKCRLVE 495
KDLPITKA P +DPDTRKKVERALS VEMK+KEAAYQAWLGYYNS K VGRDK RLVE
Sbjct: 768 AKDLPITKAEAPLVDPDTRKKVERALSQVEMKSKEAAYQAWLGYYNSNKKVGRDKVRLVE 827
Query: 494 LANEFSRSMGLDTPPAIAKLILGKMGLRNVPGLRTK 387
LANEFSR+MGLD PPAI KLILGKMGLRNVPGLR+K
Sbjct: 828 LANEFSRTMGLDNPPAIPKLILGKMGLRNVPGLRSK 863
>emb|CBI40505.3| unnamed protein product [Vitis vinifera]
Length = 732
Score = 861 bits (2225), Expect = 0.0
Identities = 444/555 (80%), Positives = 484/555 (87%), Gaps = 2/555 (0%)
Frame = -2
Query: 2045 KDGRDSDLQKGRKQ--AILSSDDDIETSIPSFTTFLNSESGEXXXXXDVELPKFKEVSPL 1872
+D D D RKQ + + + P L SE + ++++ K K S L
Sbjct: 182 EDDDDDDEMHSRKQIRSFRGGNSTLSKRGPQKQAHLVSEGEDEDEDEELKVLK-KNASSL 240
Query: 1871 RVSAMKDNTHITPKISSGKTESYLSETRFDQCTISPLSLKGIKDAGYENMTVVQAATLPV 1692
+A K+ P+ S+GK++SYLSETRFDQC ISPLSLK IKDAGYE MTVVQ ATLPV
Sbjct: 241 FGAAAKE---AVPRSSTGKSDSYLSETRFDQCPISPLSLKAIKDAGYEKMTVVQEATLPV 297
Query: 1691 ILKGKDVLAKARTGTGKTVAFLLPAIEVIVKSPPVDRDQKRPPINVLVVCPTRELASQAA 1512
ILKGKDVLAKA+TGTGKTVAFLLP+IE++VKSPP+ RDQKRPPI VLV+CPTRELASQAA
Sbjct: 298 ILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSPPISRDQKRPPIVVLVICPTRELASQAA 357
Query: 1511 AEATKLLKYHPSIGVQIVIGGVRLALEQKRLQANPCQILVATPGRLKDHIENTAGFATRL 1332
AEA LLKYHPS+GVQ+VIGG RLALEQKR+QANPCQILVATPGRLKDHIENTAGFATRL
Sbjct: 358 AEANTLLKYHPSLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLKDHIENTAGFATRL 417
Query: 1331 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEDVRQICHIALRRDHD 1152
MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE+VRQICHIAL+RDH+
Sbjct: 418 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHE 477
Query: 1151 FINTVEEGSEETHAQVRQMHLVAPLDKQFSLLYALLKDHMADDVDYKVLVFCTTAMVTRL 972
FINTV+EGSEETH+QVRQ H++APLDK F LLYALLKDH+ADDVDYKVLVFCTTAMVTRL
Sbjct: 478 FINTVQEGSEETHSQVRQTHIIAPLDKHFLLLYALLKDHIADDVDYKVLVFCTTAMVTRL 537
Query: 971 VADLLGELKMNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQV 792
VADLLGEL +NVREIHSRKPQ YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQV
Sbjct: 538 VADLLGELNLNVREIHSRKPQGYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQV 597
Query: 791 GLPADREQYIHRLGRTGRKGKEGQGILLLAPWEESFLSSVKDLPITKAPVPTIDPDTRKK 612
GLP+D+EQYIHRLGRTGRKGKEGQGILLLAPWEE FLS+ KDLPITKA P +DPDTRKK
Sbjct: 598 GLPSDKEQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTAKDLPITKAEAPLVDPDTRKK 657
Query: 611 VERALSNVEMKNKEAAYQAWLGYYNSTKIVGRDKCRLVELANEFSRSMGLDTPPAIAKLI 432
VERALS VEMK+KEAAYQAWLGYYNS K VGRDK RLVELANEFSR+MGLD PPAI KLI
Sbjct: 658 VERALSQVEMKSKEAAYQAWLGYYNSNKKVGRDKVRLVELANEFSRTMGLDNPPAIPKLI 717
Query: 431 LGKMGLRNVPGLRTK 387
LGKMGLRNVPGLR+K
Sbjct: 718 LGKMGLRNVPGLRSK 732
>ref|XP_003529893.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Glycine max]
Length = 703
Score = 855 bits (2208), Expect = 0.0
Identities = 452/584 (77%), Positives = 498/584 (85%), Gaps = 16/584 (2%)
Frame = -2
Query: 2090 RKGQGLR-GAVSSPSKK------DGRDSDLQKGRKQ------AILSSDDDIETSIPSFTT 1950
R+G+ LR G S S++ D D+++ GRK A S D+D + S
Sbjct: 130 RRGEDLRKGGQSVGSRRKFQPRSDDDDNEVMNGRKLKGGGVGAFPSEDEDEDEDEESE-- 187
Query: 1949 FLNSESGEXXXXXDVELPKFKEVSPLRVSAMKDNTHITPKISS--GKTESYLSETRFDQC 1776
SE E L F + + L + NT TP+ SS G ++SYLSETRFDQC
Sbjct: 188 --GSEEEEILNKSRTAL--FGQQNVLN----RRNTEPTPRPSSPGGGSDSYLSETRFDQC 239
Query: 1775 TISPLSLKGIKDAGYENMTVVQAATLPVILKGKDVLAKARTGTGKTVAFLLPAIEVIVKS 1596
+ISPLSLKG+KDAGYE MTVVQ ATLPVILKGKDVLAKA+TGTGKTVAFLLP+IEV+ KS
Sbjct: 240 SISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKS 299
Query: 1595 PPVDRDQKRPPINVLVVCPTRELASQAAAEATKLLKYHPSIGVQIVIGGVRLALEQKRLQ 1416
PP DRD +RPPI VLV+CPTRELASQAAAEATKLLKYHP+IGVQ+VIGG RLALEQKR+Q
Sbjct: 300 PPSDRDHRRPPIAVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQ 359
Query: 1415 ANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK 1236
ANPCQILVATPGRL+DH ENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK
Sbjct: 360 ANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK 419
Query: 1235 QRQTLLFSATVPEDVRQICHIALRRDHDFINTVEEGSEETHAQVRQMHLVAPLDKQFSLL 1056
QRQTL+FSATVPE+VRQ+CHIALRRDH+FINTV+EG+EETH+QV Q HLVAPLDK FSLL
Sbjct: 420 QRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVCQTHLVAPLDKHFSLL 479
Query: 1055 YALLKDHMADDVDYKVLVFCTTAMVTRLVADLLGELKMNVREIHSRKPQSYRTRVSDEFR 876
Y LLKDH+ADDVDYKVLVFCTTAMVTRLVA+LLGEL +NVREIHSRKPQSYRTRVS+EFR
Sbjct: 480 YVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFR 539
Query: 875 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPW 696
KSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGR+GKEGQGILLLAPW
Sbjct: 540 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPW 599
Query: 695 EESFLSSVKDLPITKAP-VPTIDPDTRKKVERALSNVEMKNKEAAYQAWLGYYNSTKIVG 519
E+ FLS+VKDLPI KAP VP++DPDT+KKVE+ALSNVEMKNKEAAYQAWLGYYNS K VG
Sbjct: 600 EDFFLSTVKDLPIEKAPVVPSVDPDTKKKVEKALSNVEMKNKEAAYQAWLGYYNSNKKVG 659
Query: 518 RDKCRLVELANEFSRSMGLDTPPAIAKLILGKMGLRNVPGLRTK 387
RDK RLVELANEFSRSMGLD PPAI KL+LGKMGLRN+PGLR K
Sbjct: 660 RDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK 703
>ref|XP_002523364.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223537452|gb|EEF39080.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 751
Score = 852 bits (2202), Expect = 0.0
Identities = 420/480 (87%), Positives = 460/480 (95%)
Frame = -2
Query: 1826 SSGKTESYLSETRFDQCTISPLSLKGIKDAGYENMTVVQAATLPVILKGKDVLAKARTGT 1647
S G ++SYLS++RFDQC +SPLSLKGIKDAGYE MTVVQ ATLPVILKGKDVLAKARTGT
Sbjct: 272 SPGTSDSYLSDSRFDQCPVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKARTGT 331
Query: 1646 GKTVAFLLPAIEVIVKSPPVDRDQKRPPINVLVVCPTRELASQAAAEATKLLKYHPSIGV 1467
GKTVAFLLPAIEV+VKSPP RDQKRPPI V+V+CPTRELASQAAAEA LLKYHPS+GV
Sbjct: 332 GKTVAFLLPAIEVVVKSPPTGRDQKRPPILVVVICPTRELASQAAAEANTLLKYHPSVGV 391
Query: 1466 QIVIGGVRLALEQKRLQANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLL 1287
Q+VIGG RLALEQK++QANPCQILVATPGRL+DHIENTAGFATRLMGVKVL+LDEADHLL
Sbjct: 392 QVVIGGTRLALEQKKMQANPCQILVATPGRLQDHIENTAGFATRLMGVKVLILDEADHLL 451
Query: 1286 DMGFRKDIEKIIAAVPKQRQTLLFSATVPEDVRQICHIALRRDHDFINTVEEGSEETHAQ 1107
DMGFRKDIE+IIAAVPKQRQTLLFSATVPE+VRQICHIALRRDH+FINTV EG++ETH Q
Sbjct: 452 DMGFRKDIERIIAAVPKQRQTLLFSATVPEEVRQICHIALRRDHEFINTVPEGTDETHTQ 511
Query: 1106 VRQMHLVAPLDKQFSLLYALLKDHMADDVDYKVLVFCTTAMVTRLVADLLGELKMNVREI 927
VRQMHLVAPLDK F LLY LLKDH+AD++DYKVL+FCTTAMVTR+VA+LLGELK+NVREI
Sbjct: 512 VRQMHLVAPLDKHFPLLYVLLKDHIADNIDYKVLLFCTTAMVTRMVANLLGELKLNVREI 571
Query: 926 HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGR 747
HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGR
Sbjct: 572 HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGR 631
Query: 746 TGRKGKEGQGILLLAPWEESFLSSVKDLPITKAPVPTIDPDTRKKVERALSNVEMKNKEA 567
TGRKGKEG GILLLAPWEESFLS++KDLPI+KAPVP++DPDT+KKVER+LS+VEMKNKEA
Sbjct: 632 TGRKGKEGVGILLLAPWEESFLSTIKDLPISKAPVPSVDPDTKKKVERSLSHVEMKNKEA 691
Query: 566 AYQAWLGYYNSTKIVGRDKCRLVELANEFSRSMGLDTPPAIAKLILGKMGLRNVPGLRTK 387
AYQAWLGYYNS+K+VGRDK RLVELAN+FSRSMGLD PPAI KL+LGKMGLRN+PGLR+K
Sbjct: 692 AYQAWLGYYNSSKLVGRDKYRLVELANDFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 751