BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000659
         (1189 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays] gi|4...   465   e-128
ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-l...   463   e-128
ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]...   462   e-128
gb|ACF88009.1| unknown [Zea mays] gi|223975603|gb|ACN31989.1| un...   462   e-128
ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [...   462   e-128

>gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
           gi|413935080|gb|AFW69631.1| exosome complex exonuclease
           RRP42 isoform 1 [Zea mays] gi|413935081|gb|AFW69632.1|
           exosome complex exonuclease RRP42 isoform 2 [Zea mays]
           gi|413935082|gb|AFW69633.1| exosome complex exonuclease
           RRP42 isoform 3 [Zea mays] gi|413935083|gb|AFW69634.1|
           exosome complex exonuclease RRP42 isoform 4 [Zea mays]
          Length = 287

 Score =  465 bits (1196), Expect = e-128
 Identities = 230/278 (82%), Positives = 257/278 (92%)
 Frame = +3

Query: 12  MVGLSGGEKHYIEGGIAQDLRTDGRTRLAYRQISVETGVIPQANGSARVKLGGTDVIASV 191
           MVGLS GEKH+I GGIAQDLRTDGR RL +R +SV+TGVIPQANGSARV+LG TD+IASV
Sbjct: 1   MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATDIIASV 60

Query: 192 KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 371
           KAELGKP+ L+PDKGKVAI+VDCSPTA P+FEGRG EE SAELS++LQRC LGGKSGAGA
Sbjct: 61  KAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGA 120

Query: 372 GINLSSLIVVEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 551
            I+LSSLIVV+GK+CWDLYIDGLV+SSDGNLLDAL  AIK ALS+TGIPKVNV+V A++D
Sbjct: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 180

Query: 552 EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 731
           EEPEVD+SDEEFLQFDTSGVPVI+TLTKVGRHYI DATSEEESQMSSA+S+SVNRHG IC
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240

Query: 732 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 845
           GLTKRGGAGLDPSVI DMISVAKHVS+Q I+ LDSEI+
Sbjct: 241 GLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDSEIA 278


>ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
          Length = 286

 Score =  463 bits (1191), Expect = e-128
 Identities = 235/278 (84%), Positives = 252/278 (90%)
 Frame = +3

Query: 12  MVGLSGGEKHYIEGGIAQDLRTDGRTRLAYRQISVETGVIPQANGSARVKLGGTDVIASV 191
           MVGLS GE H+I+GGIAQDLR DGR RL YR ISVETGVIPQ NGSARV++G TDVIASV
Sbjct: 1   MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 192 KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 371
           KAELGKP+ L PDKGKV+IYVDCS TA P FEGRGG+E +AELS ALQRC LGGKSGAGA
Sbjct: 61  KAELGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGA 120

Query: 372 GINLSSLIVVEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 551
           GI+LSSLIVVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP+V VA G S D
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 552 EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 731
           E PEVD+SDEEFLQFDTS VPVIVTLTKVGRHYI DATSEEESQMSSA+SISVNR GHIC
Sbjct: 181 EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRQGHIC 240

Query: 732 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 845
           G+TKRGG GLDPS+ILDMISVAKHVSEQLI KLDSEI+
Sbjct: 241 GITKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIA 278


>ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]
           gi|195636336|gb|ACG37636.1| exosome complex exonuclease
           RRP42 [Zea mays]
          Length = 287

 Score =  462 bits (1189), Expect = e-128
 Identities = 228/278 (82%), Positives = 257/278 (92%)
 Frame = +3

Query: 12  MVGLSGGEKHYIEGGIAQDLRTDGRTRLAYRQISVETGVIPQANGSARVKLGGTDVIASV 191
           MVGLS GEKH+I GGIAQD+RTDGR RL +R +SV+TGVIPQANGSARV+LG T++IASV
Sbjct: 1   MVGLSEGEKHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASV 60

Query: 192 KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 371
           KAELGKP+ L+PDKGKVAI+VDCSPTA P+FEGRG EE SAELS++LQRC LGGKSGAGA
Sbjct: 61  KAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGA 120

Query: 372 GINLSSLIVVEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 551
            I+LSSLIVV+GK+CWDLYIDGLV+SSDGNLLDAL  AIK ALS+TGIPKVNV+V A++D
Sbjct: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 180

Query: 552 EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 731
           EEPEVD+SDEEFLQFDTSGVPVI+TLTKVGRHYI DATSEEESQMSSA+S+SVNRHG IC
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240

Query: 732 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 845
           GLTKRGGAGLDPSVI DMISVAKHVS+Q I+ LDSEI+
Sbjct: 241 GLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDSEIA 278


>gb|ACF88009.1| unknown [Zea mays] gi|223975603|gb|ACN31989.1| unknown [Zea mays]
           gi|413935071|gb|AFW69622.1| exosome complex exonuclease
           RRP42 isoform 1 [Zea mays] gi|413935072|gb|AFW69623.1|
           exosome complex exonuclease RRP42 isoform 2 [Zea mays]
           gi|413935073|gb|AFW69624.1| exosome complex exonuclease
           RRP42 isoform 3 [Zea mays]
          Length = 287

 Score =  462 bits (1189), Expect = e-128
 Identities = 228/278 (82%), Positives = 257/278 (92%)
 Frame = +3

Query: 12  MVGLSGGEKHYIEGGIAQDLRTDGRTRLAYRQISVETGVIPQANGSARVKLGGTDVIASV 191
           MVGLS GEKH+I GGIAQD+RTDGR RL +R +SV+TGVIPQANGSARV+LG T++IASV
Sbjct: 1   MVGLSEGEKHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASV 60

Query: 192 KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 371
           KAELGKP+ L+PDKGKVAI+VDCSPTA P+FEGRG EE SAELS++LQRC LGGKSGAGA
Sbjct: 61  KAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGA 120

Query: 372 GINLSSLIVVEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 551
            I+LSSLIVV+GK+CWDLYIDGLV+SSDGNLLDAL  AIK ALS+TGIPKVNV+V A++D
Sbjct: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 180

Query: 552 EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 731
           EEPEVD+SDEEFLQFDTSGVPVI+TLTKVGRHYI DATSEEESQMSSA+S+SVNRHG IC
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240

Query: 732 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 845
           GLTKRGGAGLDPSVI DMISVAKHVS+Q I+ LDSEI+
Sbjct: 241 GLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDSEIA 278


>ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [Vitis vinifera]
           gi|296082105|emb|CBI21110.3| unnamed protein product
           [Vitis vinifera]
          Length = 287

 Score =  462 bits (1189), Expect = e-128
 Identities = 237/278 (85%), Positives = 253/278 (91%)
 Frame = +3

Query: 12  MVGLSGGEKHYIEGGIAQDLRTDGRTRLAYRQISVETGVIPQANGSARVKLGGTDVIASV 191
           MVGLS GEKH+I+GGIAQDLRTDGR RL YR  +VETGVIPQANGSARV+LGGTDVIASV
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASV 60

Query: 192 KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 371
           KAELGKP+   PDKGKV IYVDCSPTAAPMFEGRGGEE S ELS ALQ C LGGKSGAGA
Sbjct: 61  KAELGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAGA 120

Query: 372 GINLSSLIVVEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 551
           GI+LSSL+VVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAAL+NTGIPKV VAVGAS D
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGD 180

Query: 552 EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 731
             PEVDISD+E+LQFDTSGVPVIVTLTKVGRHYI DAT EEESQMSSA+S+SV+  G IC
Sbjct: 181 GLPEVDISDDEYLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSVSGQGRIC 240

Query: 732 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 845
           GL KRGGAGLDPSVILDMISVAKHVSEQL+ KLDSEIS
Sbjct: 241 GLIKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEIS 278