BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000649
         (1115 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003604568.1| 40S ribosomal protein S4 [Medicago truncatul...   461   e-127
ref|XP_003547932.1| PREDICTED: 40S ribosomal protein S4-1-like [...   457   e-126
ref|NP_001235826.1| 40S ribosomal S4 protein [Glycine max] gi|22...   456   e-126
ref|XP_002268192.1| PREDICTED: 40S ribosomal protein S4-like [Vi...   456   e-126
ref|XP_003544057.1| PREDICTED: 40S ribosomal protein S4-1-like [...   455   e-125

>ref|XP_003604568.1| 40S ribosomal protein S4 [Medicago truncatula]
            gi|355505623|gb|AES86765.1| 40S ribosomal protein S4
            [Medicago truncatula]
          Length = 264

 Score =  461 bits (1185), Expect = e-127
 Identities = 227/263 (86%), Positives = 239/263 (90%)
 Frame = -1

Query: 1043 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 864
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 863  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 684
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSV+D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120

Query: 683  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDXXXX 504
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLI+ANDTIKLDLENNKI DFIKFD    
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDVGNV 180

Query: 503  XXXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 324
                         VIK+REKHKGTFET +VQDA+GH FATRL NV+TIGKGTKPWVSLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGTFETIHVQDASGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 323  GKGIKLSIIEEAKKRQAAQAVTA 255
            GKGIKL++IEEA+KRQAAQ VTA
Sbjct: 241  GKGIKLTVIEEARKRQAAQNVTA 263


>ref|XP_003547932.1| PREDICTED: 40S ribosomal protein S4-1-like [Glycine max]
          Length = 264

 Score =  457 bits (1176), Expect = e-126
 Identities = 226/263 (85%), Positives = 237/263 (90%)
 Frame = -1

Query: 1043 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 864
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 863  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 684
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSV+D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120

Query: 683  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDXXXX 504
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLE NKIVDFIKFD    
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNV 180

Query: 503  XXXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 324
                         VIK+REKHKG+FET +VQDATGH FATR+ NV+TIGKGTKPW+SLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 323  GKGIKLSIIEEAKKRQAAQAVTA 255
            GKGIKLSIIEEA+KR AAQ  TA
Sbjct: 241  GKGIKLSIIEEARKRIAAQQATA 263


>ref|NP_001235826.1| 40S ribosomal S4 protein [Glycine max] gi|22138108|gb|AAM93434.1| 40S
            ribosomal S4 protein [Glycine max]
            gi|255641970|gb|ACU21252.1| unknown [Glycine max]
          Length = 264

 Score =  456 bits (1173), Expect = e-126
 Identities = 225/263 (85%), Positives = 237/263 (90%)
 Frame = -1

Query: 1043 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 864
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 863  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 684
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSV+D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120

Query: 683  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDXXXX 504
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLE NKIVDFIKFD    
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNV 180

Query: 503  XXXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 324
                         VIK+REKHKG+FET +VQD+TGH FATR+ NV+TIGKGTKPW+SLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDSTGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 323  GKGIKLSIIEEAKKRQAAQAVTA 255
            GKGIKLSIIEEA+KR AAQ  TA
Sbjct: 241  GKGIKLSIIEEARKRIAAQQATA 263


>ref|XP_002268192.1| PREDICTED: 40S ribosomal protein S4-like [Vitis vinifera]
          Length = 264

 Score =  456 bits (1172), Expect = e-126
 Identities = 224/260 (86%), Positives = 236/260 (90%)
 Frame = -1

Query: 1043 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 864
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 863  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 684
            V+AILMQRH+LVDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 683  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDXXXX 504
            FKLCKV+ VQ GQKGIPYLNTYDGRTIRYPDPLI+ANDT+KLDLE+NKIVDFIKFD    
Sbjct: 121  FKLCKVKGVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTVKLDLESNKIVDFIKFDVGNV 180

Query: 503  XXXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 324
                         VIKSREKHKGTFET +VQDATGH FATRL NV+TIGKGTKPWV+LPK
Sbjct: 181  VMVTGGRNRGRVGVIKSREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVTLPK 240

Query: 323  GKGIKLSIIEEAKKRQAAQA 264
            GKGIKLSIIEEAKKR AAQA
Sbjct: 241  GKGIKLSIIEEAKKRLAAQA 260


>ref|XP_003544057.1| PREDICTED: 40S ribosomal protein S4-1-like [Glycine max]
          Length = 264

 Score =  455 bits (1170), Expect = e-125
 Identities = 223/262 (85%), Positives = 236/262 (90%)
 Frame = -1

Query: 1043 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 864
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 863  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 684
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAK 120

Query: 683  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDXXXX 504
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLIRANDT+KLDLE NKIVDFIKFD    
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNV 180

Query: 503  XXXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 324
                         VIK+REKHKG+FET +VQDATGH FATR+ NV+TIGKGTKPW+SLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 323  GKGIKLSIIEEAKKRQAAQAVT 258
            GKGIKLSIIEEA+KR AAQ  T
Sbjct: 241  GKGIKLSIIEEARKRIAAQQAT 262