BLASTX nr result
ID: Coptis23_contig00000647
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000647
(2236 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI30135.3| unnamed protein product [Vitis vinifera] 657 0.0
ref|XP_002308888.1| predicted protein [Populus trichocarpa] gi|2... 651 0.0
ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containi... 635 e-179
ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containi... 624 e-176
ref|XP_002322619.1| predicted protein [Populus trichocarpa] gi|2... 608 e-171
>emb|CBI30135.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 657 bits (1695), Expect = 0.0
Identities = 349/629 (55%), Positives = 451/629 (71%), Gaps = 6/629 (0%)
Frame = +1
Query: 88 MWALRRTINPFR--GYHVGAFRACGVKLDTLTNDLDHVAETCNLTQFVPNGSLSVPKSFY 261
MWALRR+ N + G+ +G +AC K + L+ + C Q + + LS K FY
Sbjct: 1 MWALRRSSNRLKNQGFSIGTLQACHAKSEMLSTYYKDMTGICKSPQVINDCHLSSRK-FY 59
Query: 262 EIPSAVGKLSFGSRGLSSQAGAXXXXXXXXXXXXXXXXXTPVS-DVTEEVTAEEDIED-L 435
S GS SSQAGA + ++ AE + ED L
Sbjct: 60 HPTDIYSVFSMGSCSFSSQAGAKSSGEEDDLEDGFSELEASGNAGGFQDSDAESEHEDEL 119
Query: 436 ISEPELSGEDDILIEDTHDEHDILDTKQGESDGVPPKKAASSDLFKLISIATRYTLNDVL 615
+S+P+ DD IE T +E + LDT S+ P+K SS+LFK I A+ ++ VL
Sbjct: 120 LSDPK---SDDDEIESTQNELEPLDTDTDVSEKRSPRKRVSSELFKAIMAASDQPIHSVL 176
Query: 616 DKWLERGNTLNQNEISLAMLNLRKRRFFGKALQFSEWLE--KKTTFDERGYASRLDLIAK 789
+KW + G +++ EI+ MLNLRK R F KALQFSEW+E KK ER YASR+DLIAK
Sbjct: 177 NKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEHKKLDMVERDYASRVDLIAK 236
Query: 790 VQGLYKAEAYIKDVPESFRGEVLYRTLLANFVIAGNKEKAEEVFNKMKKMEVPITAFACN 969
V+GL KAE YI+ +P+SFRGE++YRTLLAN V N +KAEEVFNKMK + PIT FACN
Sbjct: 237 VRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMKDLGFPITTFACN 296
Query: 970 QLLLLYKRVDKKKIADVLKLMELQNIKLSAFTYRLLIDARGQANDIEGMEKCVETMKEDG 1149
QLLLLYKRVDKKKIADVL LME +++K S FTY LLID +GQ+NDI GME+ VETMK +G
Sbjct: 297 QLLLLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITGMEQIVETMKAEG 356
Query: 1150 FEPDIQTQGLLVRHYVTGGFTKKAEAILKEMEGTNLKQNRWACRILLPLYADLGKDDEVG 1329
EP++Q Q +LVRHYV GG +KAEAILKEMEG NLK+NRW CR+LLP YA LGK D+V
Sbjct: 357 IEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRWVCRVLLPPYAALGKADDVE 416
Query: 1330 RIWKICDPNPHVEECLVAIEAWGKVGKVEKAEAVFDRMTQTWKKLSSRNYTTLLKVYANH 1509
RIWK+C+ NP + E + AIEA+GK+ KVE+AEA+F++M++T+K+LSS++Y+ LLKVYA+H
Sbjct: 417 RIWKVCESNPRLPEFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSKHYSALLKVYADH 476
Query: 1510 KMLTKGKDLAKRMAESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQLKPPMFT 1689
KML KGKDL K+M++SG R+ P TWDALVKLYVEAGEVEKAD ILQK+ QQ+ +K PMF+
Sbjct: 477 KMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKAMQQSPIK-PMFS 535
Query: 1690 SYMYIMDQYANRGDVHNAEKIFNRLKQAGYVGRLRQYTALLDTYVKAKVPAYGFRDRMKG 1869
+YM IMDQYA RGD+HN+EK+F++++Q+GYV RLRQ+ L+ YV AK PAYG ++RMK
Sbjct: 536 TYMAIMDQYAKRGDIHNSEKMFHQMRQSGYVSRLRQFQCLIQAYVNAKAPAYGIKERMKA 595
Query: 1870 DNVFPNKPMQAKLAKVDAFRKTAISDILD 1956
DN+FPN+ + +LA+VDAFRK+A+SD+LD
Sbjct: 596 DNIFPNRVVAGQLAQVDAFRKSAVSDLLD 624
>ref|XP_002308888.1| predicted protein [Populus trichocarpa] gi|222854864|gb|EEE92411.1|
predicted protein [Populus trichocarpa]
Length = 555
Score = 651 bits (1679), Expect = 0.0
Identities = 327/558 (58%), Positives = 424/558 (75%), Gaps = 6/558 (1%)
Frame = +1
Query: 301 RGLSSQAGAXXXXXXXXXXXXXXXXXTPVSDVTEEVTAEEDIED-LISEPELSGEDDILI 477
RG +SQAGA TP + V A ED LISEPELS +D+ I
Sbjct: 1 RGFASQAGAENSGSDDDLEDGFSELETPANANESTVNALAGNEDQLISEPELSDDDNDDI 60
Query: 478 EDTHDEHDILDTKQGESDGVP---PKKAASSDLFKLISIATRYTLNDVLDKWLERGNTLN 648
+ + L+ E+D V P+K +++LF I A+ ++ VLDKW+ G L+
Sbjct: 61 GEP--SQNALELSDNETDSVVKSLPRKRPTTELFNAIVSASDVSVQSVLDKWVAEGKDLD 118
Query: 649 QNEISLAMLNLRKRRFFGKALQFSEWLE--KKTTFDERGYASRLDLIAKVQGLYKAEAYI 822
+ EIS AM+NLRKRR FG+ALQ SEW E K F ER YASRLDLIAKV+GL+KAE YI
Sbjct: 119 RLEISNAMINLRKRRMFGRALQLSEWFEANKPQEFVERDYASRLDLIAKVRGLHKAEVYI 178
Query: 823 KDVPESFRGEVLYRTLLANFVIAGNKEKAEEVFNKMKKMEVPITAFACNQLLLLYKRVDK 1002
+P+SF+GEV+YRTLLAN V+ N +KAEEVFNKM+ +E PIT FACNQLLLLYKR+DK
Sbjct: 179 DKIPKSFKGEVIYRTLLANCVVDHNVKKAEEVFNKMRDLEFPITPFACNQLLLLYKRLDK 238
Query: 1003 KKIADVLKLMELQNIKLSAFTYRLLIDARGQANDIEGMEKCVETMKEDGFEPDIQTQGLL 1182
KKIADVL LME +N+K S FTY++LID +GQ+ND+ GM++ VETMK +G EPDI+TQ ++
Sbjct: 239 KKIADVLLLMEKENVKPSLFTYKILIDTKGQSNDMTGMDQIVETMKAEGIEPDIRTQAIM 298
Query: 1183 VRHYVTGGFTKKAEAILKEMEGTNLKQNRWACRILLPLYADLGKDDEVGRIWKICDPNPH 1362
RHYV+GG +KAEAILKEMEG NL+++RWACR +LPLY LGK DEV R+WK C+ +P
Sbjct: 299 ARHYVSGGLKEKAEAILKEMEGGNLEEHRWACRFMLPLYGALGKADEVSRVWKFCEKSPR 358
Query: 1363 VEECLVAIEAWGKVGKVEKAEAVFDRMTQTWKKLSSRNYTTLLKVYANHKMLTKGKDLAK 1542
++EC+ AIEAWG++ K+++AEAVF+ M++TWKKLSSR+Y+TLLKVYANHKML+KGKDL K
Sbjct: 359 LDECMAAIEAWGRLKKIDEAEAVFELMSKTWKKLSSRHYSTLLKVYANHKMLSKGKDLIK 418
Query: 1543 RMAESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQLKPPMFTSYMYIMDQYAN 1722
RM +SG R+ P TWDALVKLYVEAGEVEKADSIL K+ QQN++K PM++S++ IM++YA
Sbjct: 419 RMGDSGCRIGPLTWDALVKLYVEAGEVEKADSILNKAVQQNKIK-PMYSSFLIIMERYAT 477
Query: 1723 RGDVHNAEKIFNRLKQAGYVGRLRQYTALLDTYVKAKVPAYGFRDRMKGDNVFPNKPMQA 1902
+GD+HNAEK+F+R++QAGY R+RQ+ L+ Y+ AK P YG R+R+K D +FPNK + A
Sbjct: 478 KGDIHNAEKMFHRMRQAGYQARIRQFQTLIQAYIIAKAPCYGMRERLKADGIFPNKSLAA 537
Query: 1903 KLAKVDAFRKTAISDILD 1956
+LA+VDAFR+TA+SD+LD
Sbjct: 538 QLAQVDAFRRTAVSDLLD 555
>ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Vitis vinifera]
Length = 587
Score = 635 bits (1639), Expect = e-179
Identities = 336/588 (57%), Positives = 430/588 (73%), Gaps = 4/588 (0%)
Frame = +1
Query: 205 CNLTQFVPNGSLSVPKSFYEIPSAVGKLSFGSRGLSSQAGAXXXXXXXXXXXXXXXXXTP 384
C Q + + LS K FY S GS SSQAGA
Sbjct: 5 CKSPQVINDCHLSSRK-FYHPTDIYSVFSMGSCSFSSQAGAKSSGEEDDLEDGFSELEAS 63
Query: 385 VS-DVTEEVTAEEDIED-LISEPELSGEDDILIEDTHDEHDILDTKQGESDGVPPKKAAS 558
+ ++ AE + ED L+S+P+ DD IE T +E + LDT S+ P+K S
Sbjct: 64 GNAGGFQDSDAESEHEDELLSDPK---SDDDEIESTQNELEPLDTDTDVSEKRSPRKRVS 120
Query: 559 SDLFKLISIATRYTLNDVLDKWLERGNTLNQNEISLAMLNLRKRRFFGKALQFSEWLE-- 732
S+LFK I A+ ++ VL+KW + G +++ EI+ MLNLRK R F KALQFSEW+E
Sbjct: 121 SELFKAIMAASDQPIHSVLNKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEH 180
Query: 733 KKTTFDERGYASRLDLIAKVQGLYKAEAYIKDVPESFRGEVLYRTLLANFVIAGNKEKAE 912
KK ER YASR+DLIAKV+GL KAE YI+ +P+SFRGE++YRTLLAN V N +KAE
Sbjct: 181 KKLDMVERDYASRVDLIAKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAE 240
Query: 913 EVFNKMKKMEVPITAFACNQLLLLYKRVDKKKIADVLKLMELQNIKLSAFTYRLLIDARG 1092
EVFNKMK + PIT FACNQLLLLYKRVDKKKIADVL LME +++K S FTY LLID +G
Sbjct: 241 EVFNKMKDLGFPITTFACNQLLLLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKG 300
Query: 1093 QANDIEGMEKCVETMKEDGFEPDIQTQGLLVRHYVTGGFTKKAEAILKEMEGTNLKQNRW 1272
Q+NDI GME+ VETMK +G EP++Q Q +LVRHYV GG +KAEAILKEMEG NLK+NRW
Sbjct: 301 QSNDITGMEQIVETMKAEGIEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRW 360
Query: 1273 ACRILLPLYADLGKDDEVGRIWKICDPNPHVEECLVAIEAWGKVGKVEKAEAVFDRMTQT 1452
CR+LLP YA LGK D+V RIWK+C+ NP + E + AIEA+GK+ KVE+AEA+F++M++T
Sbjct: 361 VCRVLLPPYAALGKADDVERIWKVCESNPRLPEFVAAIEAYGKLKKVEEAEAIFNKMSKT 420
Query: 1453 WKKLSSRNYTTLLKVYANHKMLTKGKDLAKRMAESGQRLDPFTWDALVKLYVEAGEVEKA 1632
+K+LSS++Y+ LLKVYA+HKML KGKDL K+M++SG R+ P TWDALVKLYVEAGEVEKA
Sbjct: 421 FKRLSSKHYSALLKVYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKA 480
Query: 1633 DSILQKSSQQNQLKPPMFTSYMYIMDQYANRGDVHNAEKIFNRLKQAGYVGRLRQYTALL 1812
D ILQK+ QQ+ +K PMF++YM IMDQYA RGD+HN+EK+F++++Q+GYV RLRQ+ L+
Sbjct: 481 DKILQKAMQQSPIK-PMFSTYMAIMDQYAKRGDIHNSEKMFHQMRQSGYVSRLRQFQCLI 539
Query: 1813 DTYVKAKVPAYGFRDRMKGDNVFPNKPMQAKLAKVDAFRKTAISDILD 1956
YV AK PAYG ++RMK DN+FPN+ + +LA+VDAFRK+A+SD+LD
Sbjct: 540 QAYVNAKAPAYGIKERMKADNIFPNRVVAGQLAQVDAFRKSAVSDLLD 587
>ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Glycine max]
Length = 609
Score = 624 bits (1609), Expect = e-176
Identities = 339/636 (53%), Positives = 441/636 (69%), Gaps = 13/636 (2%)
Frame = +1
Query: 88 MWALRRT---INPFRGYHVGAFRACGVKLDTLTNDLDHVAETCNLTQFVPNGSLSVPKSF 258
MW LRR ++ +G + GA RA VKL +T + ++ A Q + LS +F
Sbjct: 1 MWTLRRASLRLSTSQGLNAGATRASAVKLVPITVE-ENEAGIPQSRQITHSRFLSAD-TF 58
Query: 259 YEIPSAVGKLSFGSRGLSSQAGAXXXXXXXXXXXXXXXXXTPVSDVTEEVTAEEDIEDLI 438
K + G+R LSSQAGA T V D +D+E +
Sbjct: 59 CRTGRVSLKFAVGTRELSSQAGASS---------------TKVDD--------DDLEGGL 95
Query: 439 SEPELSGEDDILIEDTHDEHDILDTKQGE---SDGVPPKKAAS-----SDLFKLISIATR 594
SE E+ G +D D DE + E SD P KK + S+LFK I+ A
Sbjct: 96 SELEIQGSNDESDADLSDEDEDGGKPVDEMDLSDADPTKKKSQGRRTQSELFKAIANAPG 155
Query: 595 YTLNDVLDKWLERGNTLNQNEISLAMLNLRKRRFFGKALQFSEWLE--KKTTFDERGYAS 768
+++ L+KW+E G L++ EI LA+ LR+R+ +G+A Q +WLE KK F E YAS
Sbjct: 156 LSVDSALNKWVEHGKELSRKEILLAVRELRRRKMYGRAFQLFQWLESNKKLEFMESDYAS 215
Query: 769 RLDLIAKVQGLYKAEAYIKDVPESFRGEVLYRTLLANFVIAGNKEKAEEVFNKMKKMEVP 948
+LDLIAK++GL KAE YI+ VPESFRGE+LYRTLLAN N E++FNKMK +++P
Sbjct: 216 QLDLIAKLRGLPKAEKYIESVPESFRGELLYRTLLANCASQNNLIATEKIFNKMKDLDLP 275
Query: 949 ITAFACNQLLLLYKRVDKKKIADVLKLMELQNIKLSAFTYRLLIDARGQANDIEGMEKCV 1128
+TAFACNQLLLLYK++DKKKIADVL LME +N+K S FTYR+LID++GQ+NDI GME+
Sbjct: 276 LTAFACNQLLLLYKKLDKKKIADVLLLMEKENVKPSLFTYRILIDSKGQSNDIAGMEQVF 335
Query: 1129 ETMKEDGFEPDIQTQGLLVRHYVTGGFTKKAEAILKEMEGTNLKQNRWACRILLPLYADL 1308
ETMKE+GFEPDIQ Q LL RHY + G +KAEA+LKEMEG NLK+N+W C LL LYA+L
Sbjct: 336 ETMKEEGFEPDIQIQALLARHYTSSGLKEKAEAMLKEMEGENLKENQWVCATLLRLYANL 395
Query: 1309 GKDDEVGRIWKICDPNPHVEECLVAIEAWGKVGKVEKAEAVFDRMTQTWKKLSSRNYTTL 1488
GK DEV RIWK+C+ P VE+CL A+EAWGK+ K+E+AEAVF+ +++ W KL+S+NY+ L
Sbjct: 396 GKADEVERIWKVCESKPRVEDCLAAVEAWGKLNKIEEAEAVFEMVSKKW-KLNSKNYSVL 454
Query: 1489 LKVYANHKMLTKGKDLAKRMAESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQ 1668
LK+YAN+KMLTKGK+L K MA+SG R+ P TWDALVKLY++AGEVEKADSIL K+ QQNQ
Sbjct: 455 LKIYANNKMLTKGKELVKLMADSGVRIGPLTWDALVKLYIQAGEVEKADSILHKAIQQNQ 514
Query: 1669 LKPPMFTSYMYIMDQYANRGDVHNAEKIFNRLKQAGYVGRLRQYTALLDTYVKAKVPAYG 1848
L+ PMFT+Y+ I++QYA RGDVHN+EKIF +++QAGY R+ Q+ L+ YV AKVPAYG
Sbjct: 515 LQ-PMFTTYLAILEQYAKRGDVHNSEKIFLKMRQAGYTSRISQFQVLIQAYVNAKVPAYG 573
Query: 1849 FRDRMKGDNVFPNKPMQAKLAKVDAFRKTAISDILD 1956
R+R+K DN+FPNK + +LA VDAFRK A+SD+LD
Sbjct: 574 IRERIKADNLFPNKTLANQLALVDAFRKNAVSDLLD 609
>ref|XP_002322619.1| predicted protein [Populus trichocarpa] gi|222867249|gb|EEF04380.1|
predicted protein [Populus trichocarpa]
Length = 472
Score = 608 bits (1567), Expect = e-171
Identities = 295/473 (62%), Positives = 378/473 (79%), Gaps = 2/473 (0%)
Frame = +1
Query: 544 KKAASSDLFKLISIATRYTLNDVLDKWLERGNTLNQNEISLAMLNLRKRRFFGKALQFSE 723
+K A S+LFK I A +++ VLDKW+ G L+Q EIS AM NLRKRR FG+ALQ SE
Sbjct: 1 RKKAPSELFKAIISAPGVSVHSVLDKWVAEGRDLDQLEISNAMFNLRKRRLFGRALQLSE 60
Query: 724 WLE--KKTTFDERGYASRLDLIAKVQGLYKAEAYIKDVPESFRGEVLYRTLLANFVIAGN 897
W+E K+ FDER YASRLDLIAKV+GL KAE YI+ +P+S +GEV+YRTLLAN V A N
Sbjct: 61 WVEANKRKDFDERDYASRLDLIAKVRGLQKAEVYIEKIPKSLKGEVIYRTLLANCVSANN 120
Query: 898 KEKAEEVFNKMKKMEVPITAFACNQLLLLYKRVDKKKIADVLKLMELQNIKLSAFTYRLL 1077
+KA EVFNKMK +E+PIT F+ NQLLLLYKR DKKKIADVL ME +N+K S FTY LL
Sbjct: 121 AKKAVEVFNKMKDLELPITLFSYNQLLLLYKRHDKKKIADVLLSMEKENVKPSLFTYILL 180
Query: 1078 IDARGQANDIEGMEKCVETMKEDGFEPDIQTQGLLVRHYVTGGFTKKAEAILKEMEGTNL 1257
ID +GQ+NDI GME+ ETMK +G EPDI+TQ ++ RHYV+GG +KAE +LKEMEG NL
Sbjct: 181 IDTKGQSNDIAGMEQIAETMKAEGIEPDIKTQAIMARHYVSGGLKEKAEIVLKEMEGGNL 240
Query: 1258 KQNRWACRILLPLYADLGKDDEVGRIWKICDPNPHVEECLVAIEAWGKVGKVEKAEAVFD 1437
+++RWAC+ +LPLY LGK DEV R+WK C +P ++EC+ AIEAWG++ K+ +AEAVF+
Sbjct: 241 EEHRWACQFMLPLYGTLGKADEVSRLWKFCKKSPRLDECMAAIEAWGQLKKIPEAEAVFE 300
Query: 1438 RMTQTWKKLSSRNYTTLLKVYANHKMLTKGKDLAKRMAESGQRLDPFTWDALVKLYVEAG 1617
M++TWKKLSS++Y+ LLKVYAN+KML+KGKDL K+M +SG R+ P TWDAL+KLYVEAG
Sbjct: 301 LMSKTWKKLSSKHYSALLKVYANNKMLSKGKDLIKQMGDSGCRIGPLTWDALIKLYVEAG 360
Query: 1618 EVEKADSILQKSSQQNQLKPPMFTSYMYIMDQYANRGDVHNAEKIFNRLKQAGYVGRLRQ 1797
EVEKADSIL K+ QQNQ+K PMF+SYM IM++YA +GD+HNAEK+F+R++QAGY R +Q
Sbjct: 361 EVEKADSILNKAVQQNQMK-PMFSSYMIIMEKYAKKGDIHNAEKMFHRMRQAGYQARSKQ 419
Query: 1798 YTALLDTYVKAKVPAYGFRDRMKGDNVFPNKPMQAKLAKVDAFRKTAISDILD 1956
+ L+ Y+ AK P YG R+R+K D +F NK M A+L++VDAF++T +SD+LD
Sbjct: 420 FQTLIQAYINAKAPCYGMRERLKADGLFANKAMAAQLSQVDAFKRTVVSDLLD 472