BLASTX nr result
ID: Coptis23_contig00000601
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000601
(1843 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase... 736 0.0
ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase... 736 0.0
ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase ... 732 0.0
gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides] 741 0.0
emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera] 734 0.0
>ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product
[Vitis vinifera]
Length = 474
Score = 736 bits (1900), Expect(2) = 0.0
Identities = 360/438 (82%), Positives = 399/438 (91%)
Frame = -1
Query: 1720 MAAPFSTIGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1541
MAA ST+GAVN A +NL S TGAS+P+S+FLG++LKKV SS + + SS +FKVV
Sbjct: 1 MAATISTLGAVNRAPLNLNGSGTGASVPSSAFLGNSLKKV-SSKIAHPRTSSGNFKVVAE 59
Query: 1540 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1361
+D+WKGL D SDDQQDITRGKG+VDSLFQAP +GTH A+MSSYDYIS GL
Sbjct: 60 VDEEKQTSKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPMDSGTHYAVMSSYDYISTGL 119
Query: 1360 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1181
R+YN DN MDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 1180 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1001
AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 1000 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 821
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 820 MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 641
MEKFYWAPTR+DRIGVCTGIF++DNI ED++K+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 640 WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 461
W++ VGV+GIGKKLVNSK+GPPTFE+PKMT++KLLEYG M+VQEQ+NVKRVQLADKYL+E
Sbjct: 360 WVASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 460 ASLGEANADAINSGNFFG 407
A+LG+AN DAI SG+F+G
Sbjct: 420 AALGDANEDAIKSGSFYG 437
Score = 76.3 bits (186), Expect(2) = 0.0
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = -2
Query: 375 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLYE 265
GKAAQQVN+PVPEGCTDPSA NFDPTARSD+GSCLY+
Sbjct: 437 GKAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLYQ 473
>ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product
[Vitis vinifera]
Length = 472
Score = 736 bits (1899), Expect(2) = 0.0
Identities = 359/438 (81%), Positives = 397/438 (90%)
Frame = -1
Query: 1720 MAAPFSTIGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1541
MA STIGAVN ++L SS TGAS+P+S+F GS+LKKV SS +T+ K++S SFKVV
Sbjct: 1 MATTVSTIGAVNRTPLSLNSSGTGASVPSSAFFGSSLKKV-SSRFTHPKIASGSFKVVAE 59
Query: 1540 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1361
+DRWKGL D+SDDQQDITRGKG+VDSLFQAP +GTH A+MSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 1360 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1181
R+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 1180 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1001
+KMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 1000 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 821
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 820 MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 641
MEKFYWAP R+DRIGVC GIF++DN+ +D++KIVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 640 WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 461
WISGVGVD IGKKLVNSK+GPPTFEQPKMT+EKLLEYG M+V EQ+NVKRVQLADKYL+E
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 460 ASLGEANADAINSGNFFG 407
A+LG+AN D+I G F+G
Sbjct: 420 AALGDANVDSIERGTFYG 437
Score = 73.6 bits (179), Expect(2) = 0.0
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = -2
Query: 375 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLY 268
GKAAQQV VPVPEGCTDPSA NFDPTARSDNGSC Y
Sbjct: 437 GKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472
>ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplast precursor,
putative [Ricinus communis]
Length = 473
Score = 732 bits (1890), Expect(2) = 0.0
Identities = 358/438 (81%), Positives = 392/438 (89%)
Frame = -1
Query: 1720 MAAPFSTIGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1541
MAA ST+GAVN + L S G+S+PTS+F GS+LKK+ S ++ K SS SFKVV
Sbjct: 1 MAATISTVGAVNRTPLALNGSGAGSSVPTSAFFGSSLKKLNSPRFS--KFSSGSFKVVSE 58
Query: 1540 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1361
DRW GL D+SDDQQDITRGKG+VDSLFQAP AGTH A+MSSY+Y+S GL
Sbjct: 59 YDEEKQTSADRWGGLAYDMSDDQQDITRGKGMVDSLFQAPQDAGTHYAVMSSYEYLSTGL 118
Query: 1360 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1181
R+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVF
Sbjct: 119 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVF 178
Query: 1180 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1001
AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCLFINDLDAGAGRMGG
Sbjct: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 238
Query: 1000 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 821
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 298
Query: 820 MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 641
MEKFYWAPTR+DRIGVCTGIFKTD +APEDV+K+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 299 MEKFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
Query: 640 WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 461
WI GVGV+ IGK LVNSK+GPPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKY++E
Sbjct: 359 WIGGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSE 418
Query: 460 ASLGEANADAINSGNFFG 407
A+LGEAN D+I G F+G
Sbjct: 419 AALGEANQDSIERGTFYG 436
Score = 75.5 bits (184), Expect(2) = 0.0
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = -2
Query: 375 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLYE 265
GKAAQQVN+PVPEGCTDP+AQNFDPTARSD+GSC Y+
Sbjct: 436 GKAAQQVNIPVPEGCTDPTAQNFDPTARSDDGSCTYK 472
>gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 741 bits (1912), Expect(2) = 0.0
Identities = 361/439 (82%), Positives = 399/439 (90%), Gaps = 1/439 (0%)
Frame = -1
Query: 1720 MAAPFSTIGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1541
MAA ST+GAVN+A + L S G+++P S+F G++LKKV SS +TN K+SS SFKVV
Sbjct: 1 MAATISTVGAVNTAPLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISSGSFKVVAE 60
Query: 1540 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1361
+DRW GL TD+SDDQQDITRGKG+VDSLFQAP G GTH+ I+SSY+Y+SQGL
Sbjct: 61 YDEKKQTDKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPILSSYEYLSQGL 120
Query: 1360 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1181
R YN DNNMDG+YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 121 RTYNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVF 180
Query: 1180 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK-GKMCCLFINDLDAGAGRMG 1004
AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADII+K GKMCCLFINDLDAGAGR+G
Sbjct: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLG 240
Query: 1003 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 824
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 300
Query: 823 RMEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVR 644
RMEKFYWAPTRDDRIGVC GIFK+D IA ED++K+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 301 RMEKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 360
Query: 643 KWISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLN 464
KWISGVGVD IGKKLVNS+DGPPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKYL+
Sbjct: 361 KWISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLS 420
Query: 463 EASLGEANADAINSGNFFG 407
EASLGEAN D+I+ G F+G
Sbjct: 421 EASLGEANQDSIDRGTFYG 439
Score = 66.6 bits (161), Expect(2) = 0.0
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = -2
Query: 375 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLYE 265
G+AAQQV VPV EGCTDP+A NFDPTARSD+GSC Y+
Sbjct: 439 GQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYK 475
>emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 734 bits (1894), Expect(2) = 0.0
Identities = 358/438 (81%), Positives = 396/438 (90%)
Frame = -1
Query: 1720 MAAPFSTIGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1541
MA STIGAVN ++L SS TG S+P+S+F GS+LKKV SS +T+ K++S SFKVV
Sbjct: 1 MATTVSTIGAVNRTPLSLNSSGTGXSVPSSAFFGSSLKKV-SSRFTHPKIASGSFKVVAE 59
Query: 1540 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1361
+DRWKGL D+SDDQQDITRGKG+VDSLFQAP +GTH A+MSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 1360 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1181
R+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 1180 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1001
+KMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 1000 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 821
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 820 MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 641
MEKFYWAP R+DRIGVC GIF++DN+ +D++KIVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 640 WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 461
WISGVGVD IGKKLVNSK+GPPTFEQPKMT+EKLLEYG M+V EQ+NVKRVQLADKYL+E
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 460 ASLGEANADAINSGNFFG 407
A+LG+AN D+I G F+G
Sbjct: 420 AALGDANVDSIERGTFYG 437
Score = 73.6 bits (179), Expect(2) = 0.0
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = -2
Query: 375 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLY 268
GKAAQQV VPVPEGCTDPSA NFDPTARSDNGSC Y
Sbjct: 437 GKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472