BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000574
         (1091 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot...   249   e-131
emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S...   246   e-130
gb|AAA33396.1| light-harvesting chlorophyll a/b protein precurso...   249   e-130
ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, ...   247   e-130
sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding pro...   246   e-130

>gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
           cathayensis]
          Length = 267

 Score =  249 bits (635), Expect(2) = e-131
 Identities = 117/128 (91%), Positives = 125/128 (97%), Gaps = 1/128 (0%)
 Frame = +3

Query: 3   AGKAVKLAPSASELLGEGRITMRKTVGKPKPVSA-SPWYGPDRVKYLGPFSGESPSYLTG 179
           AG+A+KLAPS+S+LLGEGR+TMRKT G+PKPVS+ SPWYGPDRVKYLGPFSGE PSYLTG
Sbjct: 14  AGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTG 73

Query: 180 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 359
           EFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF
Sbjct: 74  EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 133

Query: 360 KAGAQIFS 383
           KAGAQIFS
Sbjct: 134 KAGAQIFS 141



 Score =  247 bits (631), Expect(2) = e-131
 Identities = 119/122 (97%), Positives = 121/122 (99%)
 Frame = +2

Query: 500 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 679
           DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV DP+YPGGSFDPLGLADDP
Sbjct: 146 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDP 205

Query: 680 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 859
           EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVP
Sbjct: 206 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 265

Query: 860 GK 865
           GK
Sbjct: 266 GK 267


>emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
          Length = 267

 Score =  246 bits (629), Expect(2) = e-130
 Identities = 119/122 (97%), Positives = 121/122 (99%)
 Frame = +2

Query: 500 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 679
           DYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP
Sbjct: 146 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 205

Query: 680 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 859
           EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+FATNFVP
Sbjct: 206 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSFATNFVP 265

Query: 860 GK 865
           GK
Sbjct: 266 GK 267



 Score =  246 bits (627), Expect(2) = e-130
 Identities = 116/128 (90%), Positives = 123/128 (96%), Gaps = 1/128 (0%)
 Frame = +3

Query: 3   AGKAVKLAPSASELLGEGRITMRKTVGKPKPVSA-SPWYGPDRVKYLGPFSGESPSYLTG 179
           AGKA+KL P+ASE+LGEGR+TMRKT GKPK VS+ SPWYGPDRVKYLGPFSGE+PSYLTG
Sbjct: 14  AGKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTG 73

Query: 180 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 359
           EFPGDYGWDTAGLSADPETFSKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWF
Sbjct: 74  EFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 133

Query: 360 KAGAQIFS 383
           KAG+QIFS
Sbjct: 134 KAGSQIFS 141


>gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
          Length = 266

 Score =  249 bits (636), Expect(2) = e-130
 Identities = 119/122 (97%), Positives = 122/122 (100%)
 Frame = +2

Query: 500 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 679
           DYLGNPSLVHAQSILAIWATQV+LMGAVEGYR+AGGPLGEVVDPLYPGGSFDPLGLADDP
Sbjct: 145 DYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDP 204

Query: 680 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 859
           EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP
Sbjct: 205 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 264

Query: 860 GK 865
           GK
Sbjct: 265 GK 266



 Score =  243 bits (619), Expect(2) = e-130
 Identities = 114/127 (89%), Positives = 123/127 (96%), Gaps = 1/127 (0%)
 Frame = +3

Query: 6   GKAVKLAPSASELLGEGRITMRKTVGKPKPVSA-SPWYGPDRVKYLGPFSGESPSYLTGE 182
           GKAVKLAP+ASE+ GEGR++MRKT GKPKPVS+ SPWYGPDRVKYLGPFSGE+PSYLTGE
Sbjct: 14  GKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGE 73

Query: 183 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 362
           F GDYGWDTAGLSADPETF+KNRELEVIH+RWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 74  FAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFK 133

Query: 363 AGAQIFS 383
           AG+QIFS
Sbjct: 134 AGSQIFS 140


>ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
           [Cucumis sativus] gi|449525484|ref|XP_004169747.1|
           PREDICTED: chlorophyll a-b binding protein,
           chloroplastic-like [Cucumis sativus]
          Length = 267

 Score =  247 bits (631), Expect(2) = e-130
 Identities = 117/128 (91%), Positives = 125/128 (97%), Gaps = 1/128 (0%)
 Frame = +3

Query: 3   AGKAVKLAPSASELLGEGRITMRKTVGKPKPVSA-SPWYGPDRVKYLGPFSGESPSYLTG 179
           AG+AVKL+P+AS+LLGEGRITMRKT GKPKPVS+ SPWYGPDRVKYLGPFSGE PSYLTG
Sbjct: 14  AGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTG 73

Query: 180 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 359
           EFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPELL+RNGVKFGEAVWF
Sbjct: 74  EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWF 133

Query: 360 KAGAQIFS 383
           KAG+QIFS
Sbjct: 134 KAGSQIFS 141



 Score =  244 bits (623), Expect(2) = e-130
 Identities = 116/122 (95%), Positives = 120/122 (98%)
 Frame = +2

Query: 500 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 679
           DYLGNPSLVHAQSILAIWA QV+LMGAVEGYRIAGGPLGE+ DP+YPGGSFDPLGLADDP
Sbjct: 146 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDP 205

Query: 680 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 859
           EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVP
Sbjct: 206 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 265

Query: 860 GK 865
           GK
Sbjct: 266 GK 267


>sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
           AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
           Precursor gi|14240|emb|CAA32526.1| chlorophyll a/b
           binding protein precursor [Spinacia oleracea]
           gi|193783447|emb|CAJ77389.3| major chlorophyll a/b
           binding protein LHCb1.3 [Spinacia oleracea]
          Length = 267

 Score =  246 bits (628), Expect(2) = e-130
 Identities = 117/128 (91%), Positives = 123/128 (96%), Gaps = 1/128 (0%)
 Frame = +3

Query: 3   AGKAVKLAPSASELLGEGRITMRKTVGKPKPV-SASPWYGPDRVKYLGPFSGESPSYLTG 179
           AGKAVKL P+ASE++GEGRITMRKT GKPK V S+SPWYGPDRVKYLGPFSGESPSYLTG
Sbjct: 14  AGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTG 73

Query: 180 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 359
           EFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWF
Sbjct: 74  EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 133

Query: 360 KAGAQIFS 383
           KAG+QIFS
Sbjct: 134 KAGSQIFS 141



 Score =  245 bits (626), Expect(2) = e-130
 Identities = 119/122 (97%), Positives = 120/122 (98%)
 Frame = +2

Query: 500 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 679
           DYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP
Sbjct: 146 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 205

Query: 680 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 859
           EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW FATNFVP
Sbjct: 206 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVP 265

Query: 860 GK 865
           GK
Sbjct: 266 GK 267