BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000178
         (1313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   295   1e-77
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c...   287   4e-75
ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop...   286   8e-75
ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [S...   282   2e-73
ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arab...   277   5e-72

>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
           Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
           29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  295 bits (756), Expect = 1e-77
 Identities = 150/199 (75%), Positives = 170/199 (85%)
 Frame = -3

Query: 996 ERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAE 817
           ERN+S DLKIFVGNLPF+ DSA +AELFE+ G VE VEVIYDK TGRSRGFGFV MS+ E
Sbjct: 80  ERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKE 139

Query: 816 DVEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXGSYDNSNRVYVGN 637
           +VEAA Q+FNGYELDGRALRVNSGPPP + E SSF  G+R       GS+D+SNRVYVGN
Sbjct: 140 EVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSR-----GGGSFDSSNRVYVGN 194

Query: 636 LSWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGVDL 457
           L+WGVD  ALE LF EQG+V++AKVVYDR+SGRSRGFGFVTYSS+EEVNNAI SL+GVDL
Sbjct: 195 LAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 254

Query: 456 DGRDIRVTMAEARPPRRQF 400
           +GR IRV+ AEARPPRRQF
Sbjct: 255 NGRAIRVSPAEARPPRRQF 273



 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 41/93 (44%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
 Frame = -3

Query: 1005 GGGERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMS 826
            GGG  ++ S  +++VGNL + VD   +  LF + G V   +V+YD+ +GRSRGFGFV  S
Sbjct: 180  GGG--SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS 237

Query: 825  TAEDVEAAVQKFNGYELDGRALRVNSGPP-PPR 730
            +AE+V  A++  +G +L+GRA+RV+     PPR
Sbjct: 238  SAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 270


>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
           Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
           RNA binding protein 30 [Nicotiana plumbaginifolia]
          Length = 279

 Score =  287 bits (735), Expect = 4e-75
 Identities = 147/200 (73%), Positives = 167/200 (83%), Gaps = 1/200 (0%)
 Frame = -3

Query: 996 ERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAE 817
           ERN+S DLKIFVGNL F+ DSA +AELFE+ G VE VEVIYDK TGRSRGFGFV MS+ E
Sbjct: 80  ERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKE 139

Query: 816 DVEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXG-SYDNSNRVYVG 640
           +VEAA Q+FNGYELDGRALRVNSGPPP + E SSF   +        G S+D+SNRVYVG
Sbjct: 140 EVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVG 199

Query: 639 NLSWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGVD 460
           NL+WGVD  ALE LF EQG+V++AKVVYDR+SGRSRGFGFVTYSS+EEVNNAI SL+GVD
Sbjct: 200 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVD 259

Query: 459 LDGRDIRVTMAEARPPRRQF 400
           L+GR IRV+ AEARPPRRQF
Sbjct: 260 LNGRAIRVSPAEARPPRRQF 279



 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 41/93 (44%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
 Frame = -3

Query: 1005 GGGERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMS 826
            GGG  ++ S  +++VGNL + VD   +  LF + G V   +V+YD+ +GRSRGFGFV  S
Sbjct: 186  GGG--SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS 243

Query: 825  TAEDVEAAVQKFNGYELDGRALRVNSGPP-PPR 730
            +AE+V  A++  +G +L+GRA+RV+     PPR
Sbjct: 244  SAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 276


>ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
            sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29
            kDa ribonucleoprotein, chloroplastic-like [Cucumis
            sativus]
          Length = 278

 Score =  286 bits (732), Expect = 8e-75
 Identities = 145/201 (72%), Positives = 166/201 (82%)
 Frame = -3

Query: 1002 GGERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMST 823
            G + +Y+ DLK+FVGNLPFTVDSA++A LFE  G VE+VEVIYDK TGRSRGFGFV MST
Sbjct: 84   GDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMST 143

Query: 822  AEDVEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXGSYDNSNRVYV 643
              +VEAA Q+FNGYELDGR LRVN GPPPP+ + SSF RG+R         +DN NRV+V
Sbjct: 144  VGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF-RGSR-----NASRFDNRNRVHV 197

Query: 642  GNLSWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGV 463
             NL+WGVDD  LENLFRE+G VLEAKVVYDR+SG+SRGFGFVTY+S+EEVN AI SL+GV
Sbjct: 198  SNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGV 257

Query: 462  DLDGRDIRVTMAEARPPRRQF 400
            DLDGR IRVT AEARPPRRQF
Sbjct: 258  DLDGRPIRVTQAEARPPRRQF 278


>ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
            gi|241919059|gb|EER92203.1| hypothetical protein
            SORBIDRAFT_01g034120 [Sorghum bicolor]
          Length = 262

 Score =  282 bits (721), Expect = 2e-73
 Identities = 141/201 (70%), Positives = 167/201 (83%)
 Frame = -3

Query: 1002 GGERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMST 823
            GGE  +S DL++FVGNLPF+VDSA++A LFE+ G+VE VEVIYDK TGRSRGFGFV MS+
Sbjct: 74   GGEEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSS 133

Query: 822  AEDVEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXGSYDNSNRVYV 643
             ++VEAAV++FNGY LDGR+LRVNSGPPPPRD +S   RG R           ++NRVYV
Sbjct: 134  VQEVEAAVEQFNGYVLDGRSLRVNSGPPPPRDPSS--QRGPR----------GDANRVYV 181

Query: 642  GNLSWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGV 463
            GNLSWGVD+ AL NLF EQG VLEA++VYDRESGRSRGFGFVTY S+EEV NAIS+L+G 
Sbjct: 182  GNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGS 241

Query: 462  DLDGRDIRVTMAEARPPRRQF 400
            DLDGR IRVT+AE++PPRRQF
Sbjct: 242  DLDGRQIRVTVAESKPPRRQF 262


>ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
           lyrata] gi|297327336|gb|EFH57756.1| hypothetical protein
           ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata]
          Length = 289

 Score =  277 bits (708), Expect = 5e-72
 Identities = 138/207 (66%), Positives = 165/207 (79%), Gaps = 8/207 (3%)
 Frame = -3

Query: 996 ERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAE 817
           ++++S+DLK+FVGNLPF VDSA++A+LFE  G VE VEVIYDK TGRSRGFGFV MS+  
Sbjct: 84  QQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVS 143

Query: 816 DVEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXGSYD--------N 661
           +VEAA  +FNGYELDGR LRVN+GPPPP+ E   F+RG R         Y         +
Sbjct: 144 EVEAAANQFNGYELDGRPLRVNAGPPPPKRE-DGFSRGPRSSFGSSGSGYGGGGGSGAGS 202

Query: 660 SNRVYVGNLSWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAI 481
            NRVYVGNLSWGVDD ALE+LF EQG+V+EA+V+YDR+SGRS+GFGFVTY+SS+EV NAI
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAI 262

Query: 480 SSLNGVDLDGRDIRVTMAEARPPRRQF 400
           +SLNG DLDGR IRV+ AEARPPRRQF
Sbjct: 263 NSLNGADLDGRQIRVSEAEARPPRRQF 289



 Score = 81.3 bits (199), Expect = 5e-13
 Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = -3

Query: 1005 GGGERNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMS 826
            GGG     S  +++VGNL + VD   +  LF + G V +  VIYD+ +GRS+GFGFV  +
Sbjct: 194  GGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYN 253

Query: 825  TAEDVEAAVQKFNGYELDGRALRVNSGPP-PPR 730
            ++++V+ A+   NG +LDGR +RV+     PPR
Sbjct: 254  SSQEVQNAINSLNGADLDGRQIRVSEAEARPPR 286