BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000016
         (643 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524033.1| delta DNA polymerase, putative [Ricinus comm...   127   2e-27
ref|XP_002325451.1| predicted protein [Populus trichocarpa] gi|2...   125   5e-27
ref|NP_563854.1| DNA polymerase delta subunit 4 [Arabidopsis tha...   119   5e-25
ref|XP_002319772.1| predicted protein [Populus trichocarpa] gi|1...   119   5e-25
ref|XP_002889772.1| DNA polymerase delta subunit 4 family [Arabi...   118   8e-25

>ref|XP_002524033.1| delta DNA polymerase, putative [Ricinus communis]
           gi|223536760|gb|EEF38401.1| delta DNA polymerase,
           putative [Ricinus communis]
          Length = 126

 Score =  127 bits (318), Expect = 2e-27
 Identities = 59/80 (73%), Positives = 66/80 (82%), Gaps = 1/80 (1%)
 Frame = -3

Query: 413 TQPPALISHGSP-DLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKLGLNPPKQ 237
           TQP ALISHG   DL+DDY + EEVLRQFDMNMAYGPC+GM+R+GRWERA +LGLNPPKQ
Sbjct: 47  TQPTALISHGGALDLQDDYDKNEEVLRQFDMNMAYGPCLGMTRVGRWERAQRLGLNPPKQ 106

Query: 236 IEGLLTQGKTGLGCLWDGRI 177
           IE LL  GK    CLWDGR+
Sbjct: 107 IEDLLKGGKVNSECLWDGRV 126


>ref|XP_002325451.1| predicted protein [Populus trichocarpa] gi|222862326|gb|EEE99832.1|
           predicted protein [Populus trichocarpa]
          Length = 121

 Score =  125 bits (315), Expect = 5e-27
 Identities = 58/79 (73%), Positives = 64/79 (81%)
 Frame = -3

Query: 413 TQPPALISHGSPDLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKLGLNPPKQI 234
           TQP AL+SH SPDLKDDY + E+VLRQFDMN AYGPC+GMSRL RWERA +LGLNPPK+I
Sbjct: 43  TQPTALVSHDSPDLKDDYDKHEDVLRQFDMNPAYGPCLGMSRLARWERAQRLGLNPPKEI 102

Query: 233 EGLLTQGKTGLGCLWDGRI 177
           EGLL   K    CLWDG I
Sbjct: 103 EGLLKGEKVRSECLWDGCI 121


>ref|NP_563854.1| DNA polymerase delta subunit 4 [Arabidopsis thaliana]
           gi|98961061|gb|ABF59014.1| At1g09815 [Arabidopsis
           thaliana] gi|332190377|gb|AEE28498.1| DNA polymerase
           delta subunit 4 [Arabidopsis thaliana]
          Length = 124

 Score =  119 bits (298), Expect = 5e-25
 Identities = 53/79 (67%), Positives = 63/79 (79%)
 Frame = -3

Query: 413 TQPPALISHGSPDLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKLGLNPPKQI 234
           TQP ALISHGS DL +DY +EEE+LRQFDMN+ YGPC+GM+RL RWERA +LG+NPP +I
Sbjct: 46  TQPAALISHGSVDLNEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEI 105

Query: 233 EGLLTQGKTGLGCLWDGRI 177
           E LL  GK    CLW GR+
Sbjct: 106 EKLLKTGKVQQDCLWQGRV 124


>ref|XP_002319772.1| predicted protein [Populus trichocarpa] gi|118488437|gb|ABK96033.1|
           unknown [Populus trichocarpa]
           gi|222858148|gb|EEE95695.1| predicted protein [Populus
           trichocarpa]
          Length = 122

 Score =  119 bits (298), Expect = 5e-25
 Identities = 54/79 (68%), Positives = 60/79 (75%)
 Frame = -3

Query: 413 TQPPALISHGSPDLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKLGLNPPKQI 234
           TQP A +SHGSPD KD Y E EE+LRQFDMNMAYGPC+GMSRL RWERA +LGLNPP + 
Sbjct: 44  TQPTAQVSHGSPDHKDYYDEHEELLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPPNEF 103

Query: 233 EGLLTQGKTGLGCLWDGRI 177
           EGLL        C WDGR+
Sbjct: 104 EGLLKAEMVQSECWWDGRV 122


>ref|XP_002889772.1| DNA polymerase delta subunit 4 family [Arabidopsis lyrata subsp.
           lyrata] gi|297335614|gb|EFH66031.1| DNA polymerase delta
           subunit 4 family [Arabidopsis lyrata subsp. lyrata]
          Length = 122

 Score =  118 bits (296), Expect = 8e-25
 Identities = 53/78 (67%), Positives = 63/78 (80%)
 Frame = -3

Query: 410 QPPALISHGSPDLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKLGLNPPKQIE 231
           QP ALISHGS DL +DY +EEE+LRQFDMN+AYGPC+GM+RL RWERA +LG+NPP +IE
Sbjct: 45  QPAALISHGSLDLNEDYDKEEEMLRQFDMNIAYGPCLGMTRLDRWERALRLGMNPPNEIE 104

Query: 230 GLLTQGKTGLGCLWDGRI 177
            LL  GK    CLW GR+
Sbjct: 105 KLLKTGKVQQDCLWQGRV 122