BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000015
         (1170 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding ...   491   e-136
ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 1...   491   e-136
ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 1...   491   e-136
gb|AFK48392.1| unknown [Lotus japonicus]                              490   e-136
ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 1...   488   e-136

>gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
          Length = 269

 Score =  491 bits (1265), Expect = e-136
 Identities = 234/255 (91%), Positives = 248/255 (97%)
 Frame = +3

Query: 108 VLRPSQFLGQVRSSDVNSLRDVVAMGTGKFSMSNDLWYGPDRVKYLGPFSAQTPSYLNGE 287
           VL+P+ FLGQ ++S+ N LRDVV+MG+GK+SMSN+LWYGPDRVKYLGPFSAQTPSYL GE
Sbjct: 15  VLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGE 74

Query: 288 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWF 467
           FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW++VDFKEPVWF
Sbjct: 75  FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWF 134

Query: 468 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLEGVGDGNNLYPG 647
           KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL+GVG+GNNLYPG
Sbjct: 135 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPG 194

Query: 648 GTYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDSPV 827
           G YFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD+PV
Sbjct: 195 GQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 254

Query: 828 ANNAWVYATKFVPGS 872
           ANNAWVYATKF PGS
Sbjct: 255 ANNAWVYATKFAPGS 269


>ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
           [Cucumis sativus] gi|449532805|ref|XP_004173369.1|
           PREDICTED: chlorophyll a-b binding protein 13,
           chloroplastic-like [Cucumis sativus]
          Length = 264

 Score =  491 bits (1263), Expect = e-136
 Identities = 234/255 (91%), Positives = 245/255 (96%)
 Frame = +3

Query: 108 VLRPSQFLGQVRSSDVNSLRDVVAMGTGKFSMSNDLWYGPDRVKYLGPFSAQTPSYLNGE 287
           +LR + FLGQ R+S  N LRDVVAMGTGK++MSNDLWYGPDRVKYLGPFSAQTPSYLNGE
Sbjct: 10  LLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGE 69

Query: 288 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWF 467
           FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW+KVDFKEPVWF
Sbjct: 70  FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWF 129

Query: 468 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLEGVGDGNNLYPG 647
           KAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL+GVG+GN+LYPG
Sbjct: 130 KAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPG 189

Query: 648 GTYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDSPV 827
           G YFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD PV
Sbjct: 190 GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPV 249

Query: 828 ANNAWVYATKFVPGS 872
           ANNAWVYATKF PGS
Sbjct: 250 ANNAWVYATKFAPGS 264


>ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
           [Vitis vinifera]
          Length = 266

 Score =  491 bits (1263), Expect = e-136
 Identities = 233/255 (91%), Positives = 244/255 (95%)
 Frame = +3

Query: 108 VLRPSQFLGQVRSSDVNSLRDVVAMGTGKFSMSNDLWYGPDRVKYLGPFSAQTPSYLNGE 287
           VLRP+ FLGQ R ++ N LRDVV MGTGK++M N+LWYGPDRVKYLGPFSAQTPSYL GE
Sbjct: 12  VLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGE 71

Query: 288 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWF 467
           FPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKW++VDFKEP+WF
Sbjct: 72  FPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWF 131

Query: 468 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLEGVGDGNNLYPG 647
           KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GVGDGNNLYPG
Sbjct: 132 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPG 191

Query: 648 GTYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDSPV 827
           G YFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD+PV
Sbjct: 192 GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 251

Query: 828 ANNAWVYATKFVPGS 872
           ANNAWVYATKFVPGS
Sbjct: 252 ANNAWVYATKFVPGS 266


>gb|AFK48392.1| unknown [Lotus japonicus]
          Length = 270

 Score =  490 bits (1262), Expect = e-136
 Identities = 233/255 (91%), Positives = 245/255 (96%)
 Frame = +3

Query: 108 VLRPSQFLGQVRSSDVNSLRDVVAMGTGKFSMSNDLWYGPDRVKYLGPFSAQTPSYLNGE 287
           V++PS FLGQ + S+ N+LRDVV+MGTGK++M NDLWYGPDRVKYLGPFSAQTPSYL GE
Sbjct: 16  VIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGE 75

Query: 288 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWF 467
           FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV+VDFKEPVWF
Sbjct: 76  FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWF 135

Query: 468 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLEGVGDGNNLYPG 647
           KAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL GVG+GNNLYPG
Sbjct: 136 KAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPG 195

Query: 648 GTYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDSPV 827
             YFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD PV
Sbjct: 196 DQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPV 255

Query: 828 ANNAWVYATKFVPGS 872
           ANNAWVYATKFVPGS
Sbjct: 256 ANNAWVYATKFVPGS 270


>ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
           [Vitis vinifera]
          Length = 269

 Score =  488 bits (1257), Expect = e-136
 Identities = 232/254 (91%), Positives = 242/254 (95%)
 Frame = +3

Query: 111 LRPSQFLGQVRSSDVNSLRDVVAMGTGKFSMSNDLWYGPDRVKYLGPFSAQTPSYLNGEF 290
           LRP+QFLGQ R S+ N LR+VV MGTGKF+M N+LWYGPDRVKYLGPFSAQTPSYL GEF
Sbjct: 16  LRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEF 75

Query: 291 PGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFK 470
           PGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GCITPEVLEKWVKVDFKEPVWFK
Sbjct: 76  PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFK 135

Query: 471 AGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLEGVGDGNNLYPGG 650
           AGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG+RINGL GVG+GN+LYPGG
Sbjct: 136 AGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGEGNDLYPGG 195

Query: 651 TYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDSPVA 830
            YFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD+PVA
Sbjct: 196 PYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVA 255

Query: 831 NNAWVYATKFVPGS 872
           NNAW YATKFVPGS
Sbjct: 256 NNAWAYATKFVPGS 269