BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040678
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...   251   5e-65
ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...   249   3e-64
ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|2...   248   7e-64
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi...   246   1e-63
ref|XP_003588687.1| Pentatricopeptide repeat-containing protein ...   243   2e-62

>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score =  251 bits (642), Expect = 5e-65
 Identities = 122/184 (66%), Positives = 147/184 (79%), Gaps = 4/184 (2%)
 Frame = -3

Query: 540 MVTNDTFALLIRRYARAGMPFAAIRTYQYVSSLEF----KCGDLFEVLLDTLCKEGHVRV 373
           +V++DTFA+LIRRY RAGMP +AIRT++Y  SL+F     C  L E+LLD+LCKEGHVRV
Sbjct: 152 LVSSDTFAILIRRYTRAGMPQSAIRTFEYAISLDFICDYNCDALLEILLDSLCKEGHVRV 211

Query: 372 ASGCVTRRRGLDSEWVPTVRVYNILLNGWFRMRKLKHAERVWEEMRRENVVPTVVTYGTL 193
           A      R+ LDS W+P VR+YNI+LNGWFR RKLKHAER+W EM++ NV P+VVTYGTL
Sbjct: 212 AKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTYGTL 271

Query: 192 VEGYCRMRRVERAMELVGEMRREGIEPNAVVFNPIVDALGEAARFKEAMGMLERFSVLES 13
           VEGYCRMRRVERA+ELV  MR+EGIEPNA+V+NPI+DAL E  RFKE  GM+E F   ES
Sbjct: 272 VEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSES 331

Query: 12  GPMV 1
           GP +
Sbjct: 332 GPTI 335



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 1/172 (0%)
 Frame = -3

Query: 558 LSTNNLMVTNDTFALLIRRYARAGMPFAAIRTYQYVSSLEFKCGDL-FEVLLDTLCKEGH 382
           +  NN+  +  T+  L+  Y R      AI     +     +   L +  ++D L +EG 
Sbjct: 256 MKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGR 315

Query: 381 VRVASGCVTRRRGLDSEWVPTVRVYNILLNGWFRMRKLKHAERVWEEMRRENVVPTVVTY 202
            +  SG +     L SE  PT+  YN L+ G+ + +    A +V + M     VPT  TY
Sbjct: 316 FKEVSGMM--EYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTY 373

Query: 201 GTLVEGYCRMRRVERAMELVGEMRREGIEPNAVVFNPIVDALGEAARFKEAM 46
                 + +   +E  M L  +M   G  P+ + F+ ++  L E  R   A+
Sbjct: 374 NYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAV 425


>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
           gi|296081989|emb|CBI20994.3| unnamed protein product
           [Vitis vinifera]
          Length = 597

 Score =  249 bits (635), Expect = 3e-64
 Identities = 120/185 (64%), Positives = 151/185 (81%), Gaps = 5/185 (2%)
 Frame = -3

Query: 540 MVTNDTFALLIRRYARAGMPFAAIRTYQYVSSLEF-----KCGDLFEVLLDTLCKEGHVR 376
           +V+++TFA+LIRRYARAGM  +AIRT+++  SL+          LF++LLD+LCKEGHVR
Sbjct: 172 LVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVR 231

Query: 375 VASGCVTRRRGLDSEWVPTVRVYNILLNGWFRMRKLKHAERVWEEMRRENVVPTVVTYGT 196
           VAS    ++RGLD  WVP++RVYN+LLNGWFR RKLK AE++W  M+RENV PTVVTYGT
Sbjct: 232 VASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGT 291

Query: 195 LVEGYCRMRRVERAMELVGEMRREGIEPNAVVFNPIVDALGEAARFKEAMGMLERFSVLE 16
           LVEGYCRMRR E+A+ELVGEMR +GIEPN +V+NPI+D+L EA RFKEAMGM+ER  V E
Sbjct: 292 LVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSE 351

Query: 15  SGPMV 1
           +GP +
Sbjct: 352 TGPTI 356


>ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|222854612|gb|EEE92159.1|
           predicted protein [Populus trichocarpa]
          Length = 607

 Score =  248 bits (632), Expect = 7e-64
 Identities = 126/198 (63%), Positives = 156/198 (78%), Gaps = 7/198 (3%)
 Frame = -3

Query: 573 LLLDHLSTNNL--MVTNDTFALLIRRYARAGMPFAAIRTYQYVSSLEF----KCG-DLFE 415
           LLLD +  N    +V++DTFA+LIRRY RAGM  AAIRT++Y SSL+     + G  LFE
Sbjct: 169 LLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTSLFE 228

Query: 414 VLLDTLCKEGHVRVASGCVTRRRGLDSEWVPTVRVYNILLNGWFRMRKLKHAERVWEEMR 235
           +LLD+LCKEGHVRVA+    R+   D  WVP+VR+YNILLNGWFR RKLKHAER+W EM+
Sbjct: 229 ILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLWLEMK 288

Query: 234 RENVVPTVVTYGTLVEGYCRMRRVERAMELVGEMRREGIEPNAVVFNPIVDALGEAARFK 55
           ++NV P+VVTYGTLVEGY RMRRVERA+ELV EM+REGI+ NA+V+NPI+DAL EA RFK
Sbjct: 289 KKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEAGRFK 348

Query: 54  EAMGMLERFSVLESGPMV 1
           E +GM+E F + E GP +
Sbjct: 349 EVLGMMEHFFLCEEGPTI 366


>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
           gi|449503560|ref|XP_004162063.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  246 bits (629), Expect = 1e-63
 Identities = 120/186 (64%), Positives = 148/186 (79%), Gaps = 4/186 (2%)
 Frame = -3

Query: 546 NLMVTNDTFALLIRRYARAGMPFAAIRTYQYVSSLEFKCGD----LFEVLLDTLCKEGHV 379
           + +V+ + F +LIRRYARAGM   AIRTY++  +LE   G     LFE+LLD+LCKEGHV
Sbjct: 187 SFLVSVEVFVILIRRYARAGMVQPAIRTYEFACNLETISGTGSEGLFEILLDSLCKEGHV 246

Query: 378 RVASGCVTRRRGLDSEWVPTVRVYNILLNGWFRMRKLKHAERVWEEMRRENVVPTVVTYG 199
           RVAS    R+R + S + P++R YNIL+NGWFR RKLKHA+R+W EM++  + PTVVTYG
Sbjct: 247 RVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYG 306

Query: 198 TLVEGYCRMRRVERAMELVGEMRREGIEPNAVVFNPIVDALGEAARFKEAMGMLERFSVL 19
           TL+EGYCRMR VE A+ELV EMRREGIEPNA+V+NPIVDALGEA RFKEA+GM+ERF VL
Sbjct: 307 TLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVL 366

Query: 18  ESGPMV 1
           E GP +
Sbjct: 367 EQGPTI 372


>ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477735|gb|AES58938.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  243 bits (619), Expect = 2e-62
 Identities = 117/183 (63%), Positives = 147/183 (80%), Gaps = 5/183 (2%)
 Frame = -3

Query: 540 MVTNDTFALLIRRYARAGMPFAAIRTYQYVSSLEFKCGD-----LFEVLLDTLCKEGHVR 376
           +V+  TFA++IRRYARAGM  AAIRT+++    +          LFE+L+D+LCKEG  R
Sbjct: 175 LVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAR 234

Query: 375 VASGCVTRRRGLDSEWVPTVRVYNILLNGWFRMRKLKHAERVWEEMRRENVVPTVVTYGT 196
            AS  + RR+  D  WVP++RVYNI+LNGWFR RKLKHAER+WEEM+ ENV P+VVTYGT
Sbjct: 235 EASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGT 294

Query: 195 LVEGYCRMRRVERAMELVGEMRREGIEPNAVVFNPIVDALGEAARFKEAMGMLERFSVLE 16
           LVEGYCRMRRVE+A+E+VGEM +EGI+PNA+V+NPI+DAL EA RFKEA+GM+ERF VL+
Sbjct: 295 LVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQ 354

Query: 15  SGP 7
            GP
Sbjct: 355 IGP 357