BLASTX nr result
ID: Coptis21_contig00040495
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00040495
(331 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat... 146 1e-33
emb|CBI21281.3| unnamed protein product [Vitis vinifera] 146 1e-33
ref|XP_002512846.1| pentatricopeptide repeat-containing protein,... 135 3e-30
ref|XP_002303012.1| predicted protein [Populus trichocarpa] gi|2... 135 4e-30
ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 133 2e-29
>ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 146 bits (369), Expect = 1e-33
Identities = 73/113 (64%), Positives = 90/113 (79%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIFGN---GNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
KCG E+A+MIF N + V WTAMIS+YVQKG +EEGL+LF++MR+ V DQATFA
Sbjct: 398 KCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFAS 457
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+LR++ +ASL GKQLH+FII+ GF SNVF+GSALLD YA CGSIKDA+QTF
Sbjct: 458 LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 510
Score = 71.2 bits (173), Expect = 8e-11
Identities = 37/95 (38%), Positives = 59/95 (62%)
Frame = +2
Query: 47 NTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFACVLRSAGIVASLGFGKQLH 226
++VS+ AMI+ Y + GL E+ + LF EM+ G+ + TFA VL + + + G+Q+H
Sbjct: 214 DSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIH 273
Query: 227 AFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+F+I+ F NVF +ALLD Y+ S+ DA + F
Sbjct: 274 SFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLF 308
Score = 57.0 bits (136), Expect = 2e-06
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIFGN---GNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
K S+ DA+ +F + VS+ +IS Y G H+ LF E++ Q FA
Sbjct: 297 KHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFAT 356
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+L A G+Q+HA I S + G++L+D YA CG ++A F
Sbjct: 357 MLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIF 409
>emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 146 bits (369), Expect = 1e-33
Identities = 73/113 (64%), Positives = 90/113 (79%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIFGN---GNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
KCG E+A+MIF N + V WTAMIS+YVQKG +EEGL+LF++MR+ V DQATFA
Sbjct: 358 KCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFAS 417
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+LR++ +ASL GKQLH+FII+ GF SNVF+GSALLD YA CGSIKDA+QTF
Sbjct: 418 LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 470
Score = 57.0 bits (136), Expect = 2e-06
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIFGN---GNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
K S+ DA+ +F + VS+ +IS Y G H+ LF E++ Q FA
Sbjct: 257 KHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFAT 316
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+L A G+Q+HA I S + G++L+D YA CG ++A F
Sbjct: 317 MLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIF 369
>ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547857|gb|EEF49349.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 553
Score = 135 bits (341), Expect = 3e-30
Identities = 69/113 (61%), Positives = 89/113 (78%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIF---GNGNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
KCG E A+ IF + +TV WTA+IS+ VQKGL EEGLKLF+EMRR VS DQATFA
Sbjct: 392 KCGRSEYAERIFVKLSSKSTVPWTALISANVQKGLLEEGLKLFNEMRRTNVSADQATFAS 451
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
VL+++ +AS+ GKQLH+++IR GF SNV++GSAL+D YA CGS+K+AI+TF
Sbjct: 452 VLKASANLASISLGKQLHSYLIRSGFWSNVYSGSALVDMYAKCGSVKEAIRTF 504
Score = 67.8 bits (164), Expect = 9e-10
Identities = 31/95 (32%), Positives = 60/95 (63%)
Frame = +2
Query: 47 NTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFACVLRSAGIVASLGFGKQLH 226
++V++ A+I+ Y ++GL+E+ ++LF++M+ G TF VL + + + FG+Q+H
Sbjct: 208 DSVTYNALITGYGKEGLNEDAIRLFTQMQNLGFEPSDFTFQAVLCACIGLDDIIFGQQIH 267
Query: 227 AFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+ +++G NVF G++LLD Y+ + DA + F
Sbjct: 268 GYAVKMGLVWNVFVGNSLLDFYSKHDCVNDAWKLF 302
>ref|XP_002303012.1| predicted protein [Populus trichocarpa] gi|222844738|gb|EEE82285.1|
predicted protein [Populus trichocarpa]
Length = 815
Score = 135 bits (339), Expect = 4e-30
Identities = 71/113 (62%), Positives = 86/113 (76%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIF---GNGNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
KCG E+A IF + +TV WTAMIS+ VQ+GLHE GLKLF EMRR VS DQATFAC
Sbjct: 389 KCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFAC 448
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
VL+++ +AS+ GKQLH+ +IR GF NV++G ALLD YANC SIKDAI+TF
Sbjct: 449 VLKASANLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTF 500
Score = 73.9 bits (180), Expect = 1e-11
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIF---GNGNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
K G ++ A+ +F ++VS+ MI+ Y GL+EE ++LF EM+ G TFA
Sbjct: 187 KTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAA 246
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
V+ ++ + FG+Q+H F+++ F NVF G+A LD Y+ + + + F
Sbjct: 247 VISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLF 299
Score = 54.7 bits (130), Expect = 8e-06
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIFGNGN---TVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
K G++ A+ IF + + V+WT MI +Y + + KLF+EM R G D T+
Sbjct: 86 KSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYIT 145
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+L + Q HA I++LG N + LLD Y G + A + F
Sbjct: 146 LLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLF 198
>ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g01510-like [Cucumis
sativus]
Length = 816
Score = 133 bits (334), Expect = 2e-29
Identities = 65/113 (57%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIFGN---GNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
KC ++A+ IF N +TV WTAMIS+YVQKG HEEG+ +FS+MRR GV DQATFA
Sbjct: 389 KCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFAS 448
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+LR+ +AS+ G+QLH+ +IR GF SNV++GSALLD YA CG + DAI++F
Sbjct: 449 ILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSF 501
Score = 72.0 bits (175), Expect = 5e-11
Identities = 33/97 (34%), Positives = 59/97 (60%)
Frame = +2
Query: 41 NGNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFACVLRSAGIVASLGFGKQ 220
N +TV++ ++++ Y +GL+EE ++LF E+ G+ TFA +L +A + FG+Q
Sbjct: 203 NKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQ 262
Query: 221 LHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+H F+++ F NVF G+ALLD Y+ + + + F
Sbjct: 263 VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLF 299
Score = 62.4 bits (150), Expect = 4e-08
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 KCGSIEDAKMIFGN---GNTVSWTAMISSYVQKGLHEEGLKLFSEMRRDGVSMDQATFAC 172
K G + A+ +F VSWT +I Y+Q +E +L+++MRR G+ D T
Sbjct: 86 KFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVT 145
Query: 173 VLRSAGIVASLGFGKQLHAFIIRLGFTSNVFAGSALLDCYANCGSIKDAIQTF 331
+L G + + Q+H +I+LG+ N+ ++L+D Y + A Q F
Sbjct: 146 LLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLF 198