BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040469
         (292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75270.1| hypothetical protein VITISV_022685 [Vitis vinifera]    59   5e-07
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    57   2e-06

>emb|CAN75270.1| hypothetical protein VITISV_022685 [Vitis vinifera]
          Length = 774

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = -3

Query: 290 IFKGKYAQGLYPFHQLPSSFKSPQPDPASLPPLAFIGMKTSPNI*HSRLGHPSITTSRHV 111
           +  GK   G+Y +   P++F  P   P+SL  LAF  +KT+ +  HSRLGHPS T  +++
Sbjct: 210 LLMGKPKDGVYEW---PTTF--PSVTPSSL--LAFSSIKTTLSEWHSRLGHPSFTIMKNI 262

Query: 110 TNDFEYPLNGKIMTS-FCNACEYGKSTKPPFTLS 12
              F  PL   + +S  CNAC   KS K PF+ S
Sbjct: 263 VYKFSLPLFSPLSSSTHCNACSCNKSYKIPFSSS 296


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/75 (41%), Positives = 41/75 (54%)
 Frame = -3

Query: 236 SFKSPQPDPASLPPLAFIGMKTSPNI*HSRLGHPSITTSRHVTNDFEYPLNGKIMTSFCN 57
           S++   P P S    A+  +K S +  H RLGHPSITT + V N F  P +     S CN
Sbjct: 427 SWRRLYPLPHSSLKQAYSAIKLSLDRWHHRLGHPSITTVKQVVNKFSLPCSDLSSESVCN 486

Query: 56  ACEYGKSTKPPFTLS 12
           AC+  KS + PF +S
Sbjct: 487 ACQQAKSHQLPFPIS 501