BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040405
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containi...   148   3e-59
ref|XP_003617444.1| Pentatricopeptide repeat-containing protein ...   142   1e-56
ref|NP_181820.1| pentatricopeptide repeat-containing protein [Ar...   145   1e-55
ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containi...   143   1e-55
ref|XP_002534070.1| pentatricopeptide repeat-containing protein,...   141   1e-54

>ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
           gi|302143555|emb|CBI22116.3| unnamed protein product
           [Vitis vinifera]
          Length = 533

 Score =  148 bits (374), Expect(2) = 3e-59
 Identities = 72/105 (68%), Positives = 87/105 (82%)
 Frame = +2

Query: 215 IVLTAIIDMYCKCGRIEEAFKVFKASSKKGLSCWNSMIIGLAVNGHGEEAIQLFSDLESS 394
           IV  +IIDMYCKCG I EAF+VF+ +  KGLS WN+MI+GLA+NG   EAIQLFS LE S
Sbjct: 293 IVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECS 352

Query: 395 GLRPDYVSFIGVLTACNHSGMVNEAKYYLSLMSETYMIEPTIKHY 529
            LRPD V+F+GVLTACN+SG+V++AK Y SLMS+TY IEP+IKHY
Sbjct: 353 NLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHY 397



 Score =  105 bits (262), Expect(2) = 3e-59
 Identities = 50/71 (70%), Positives = 57/71 (80%)
 Frame = +3

Query: 6   ISWNSMIGGYVRNGRLIEAFELFRDMQREGMKPSEFTIVSLLTASAHLGALEQGKWIHAY 185
           +SWNSMI GYVRNGRL EA +LF  MQ E +KPSEFT+VSLL ASA LGAL+QG+WIH Y
Sbjct: 223 VSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDY 282

Query: 186 INKNKIELNTL 218
           I KN  ELN +
Sbjct: 283 IRKNNFELNVI 293


>ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355518779|gb|AET00403.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  142 bits (357), Expect(2) = 1e-56
 Identities = 68/106 (64%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
 Frame = +2

Query: 215 IVLTAIIDMYCKCGRIEEAFKVFKASSKKGLSCWNSMIIGLAVNGHGEEAIQLFSDLESS 394
           IV+TAIIDMYCKCG +E A +VF+   ++GLSCWNS+IIGLA+NGH  EA + FS LESS
Sbjct: 299 IVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESS 358

Query: 395 G-LRPDYVSFIGVLTACNHSGMVNEAKYYLSLMSETYMIEPTIKHY 529
             L+PD VSFIGVLTAC H G +N+A+ Y  LM   Y IEP+IKHY
Sbjct: 359 KLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHY 404



 Score =  103 bits (257), Expect(2) = 1e-56
 Identities = 47/72 (65%), Positives = 57/72 (79%)
 Frame = +3

Query: 3   AISWNSMIGGYVRNGRLIEAFELFRDMQREGMKPSEFTIVSLLTASAHLGALEQGKWIHA 182
           ++SWNSMI GYVRNG+L+EA ELF  MQ EG + SEFT+VSLL A AHLGAL+ GKW+H 
Sbjct: 228 SVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHD 287

Query: 183 YINKNKIELNTL 218
           YI +N  ELN +
Sbjct: 288 YIKRNHFELNVI 299



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 45/87 (51%)
 Frame = +2

Query: 215 IVLTAIIDMYCKCGRIEEAFKVFKASSKKGLSCWNSMIIGLAVNGHGEEAIQLFSDLESS 394
           + + ++I  Y KCG I+E+  +F     +    WNSMI G   NG   EA++LF+ ++  
Sbjct: 198 VAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVE 257

Query: 395 GLRPDYVSFIGVLTACNHSGMVNEAKY 475
           G      + + +L AC H G +   K+
Sbjct: 258 GFEVSEFTMVSLLNACAHLGALQHGKW 284


>ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
           gi|4512663|gb|AAD21717.1| hypothetical protein
           [Arabidopsis thaliana] gi|20197867|gb|AAM15291.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|110738441|dbj|BAF01146.1| hypothetical protein
           [Arabidopsis thaliana] gi|330255093|gb|AEC10187.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 559

 Score =  145 bits (367), Expect(2) = 1e-55
 Identities = 71/105 (67%), Positives = 81/105 (77%)
 Frame = +2

Query: 215 IVLTAIIDMYCKCGRIEEAFKVFKASSKKGLSCWNSMIIGLAVNGHGEEAIQLFSDLESS 394
           IV+TA+IDMYCKCG IEE   VF+ + KK LSCWNSMI+GLA NG  E A+ LFS+LE S
Sbjct: 294 IVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERS 353

Query: 395 GLRPDYVSFIGVLTACNHSGMVNEAKYYLSLMSETYMIEPTIKHY 529
           GL PD VSFIGVLTAC HSG V+ A  +  LM E YMIEP+IKHY
Sbjct: 354 GLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHY 398



 Score = 96.3 bits (238), Expect(2) = 1e-55
 Identities = 42/71 (59%), Positives = 57/71 (80%)
 Frame = +3

Query: 6   ISWNSMIGGYVRNGRLIEAFELFRDMQREGMKPSEFTIVSLLTASAHLGALEQGKWIHAY 185
           +SWNSMI G+VRNGR  +A ++FR+MQ + +KP  FT+VSLL A A+LGA EQG+WIH Y
Sbjct: 224 VSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEY 283

Query: 186 INKNKIELNTL 218
           I +N+ ELN++
Sbjct: 284 IVRNRFELNSI 294



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 48/87 (55%)
 Frame = +2

Query: 215 IVLTAIIDMYCKCGRIEEAFKVFKASSKKGLSCWNSMIIGLAVNGHGEEAIQLFSDLESS 394
           +   ++I  + KCG I++A  +F    ++    WNSMI G   NG  ++A+ +F +++  
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252

Query: 395 GLRPDYVSFIGVLTACNHSGMVNEAKY 475
            ++PD  + + +L AC + G   + ++
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRW 279


>ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  143 bits (360), Expect(2) = 1e-55
 Identities = 69/105 (65%), Positives = 85/105 (80%)
 Frame = +2

Query: 215 IVLTAIIDMYCKCGRIEEAFKVFKASSKKGLSCWNSMIIGLAVNGHGEEAIQLFSDLESS 394
           IVLTAIIDMYCKCG I +A +VF+AS  +GLSCWNS+IIGLA+NG+  +AI+ FS LE+S
Sbjct: 292 IVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEAS 351

Query: 395 GLRPDYVSFIGVLTACNHSGMVNEAKYYLSLMSETYMIEPTIKHY 529
            L+PD+VSFIGVLTAC + G V +A+ Y SLM   Y IEP+IKHY
Sbjct: 352 DLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHY 396



 Score = 99.0 bits (245), Expect(2) = 1e-55
 Identities = 44/71 (61%), Positives = 57/71 (80%)
 Frame = +3

Query: 6   ISWNSMIGGYVRNGRLIEAFELFRDMQREGMKPSEFTIVSLLTASAHLGALEQGKWIHAY 185
           ++WNSMI GYVRN RL+EA ELFR MQ E ++PSEFT+VSLL+A AHLGAL+ G+W+H Y
Sbjct: 222 VTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDY 281

Query: 186 INKNKIELNTL 218
           + +   ELN +
Sbjct: 282 VKRGHFELNVI 292


>ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525897|gb|EEF28314.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score =  141 bits (355), Expect(2) = 1e-54
 Identities = 67/105 (63%), Positives = 87/105 (82%)
 Frame = +2

Query: 215 IVLTAIIDMYCKCGRIEEAFKVFKASSKKGLSCWNSMIIGLAVNGHGEEAIQLFSDLESS 394
           IV+TAIIDMY KCG I++A +VF+++ ++GLSCWNSMI+GLA+NG   EA+QLFS L+SS
Sbjct: 290 IVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSS 349

Query: 395 GLRPDYVSFIGVLTACNHSGMVNEAKYYLSLMSETYMIEPTIKHY 529
            LRPD VSFI VLTAC+H+GMV++AK Y  LM + Y I+P IKH+
Sbjct: 350 DLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHF 394



 Score = 97.4 bits (241), Expect(2) = 1e-54
 Identities = 46/72 (63%), Positives = 56/72 (77%)
 Frame = +3

Query: 3   AISWNSMIGGYVRNGRLIEAFELFRDMQREGMKPSEFTIVSLLTASAHLGALEQGKWIHA 182
           A+SWNSMI GYVRNGR  +A ELF+ MQ E ++PSEFT+VSLL A A LGA+ QG+WIH 
Sbjct: 219 AVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHD 278

Query: 183 YINKNKIELNTL 218
           Y+ K K ELN +
Sbjct: 279 YMVKKKFELNPI 290