BLASTX nr result
ID: Coptis21_contig00040355
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00040355
(442 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267498.2| PREDICTED: putative U-box domain-containing ... 113 3e-42
ref|XP_002888693.1| hypothetical protein ARALYDRAFT_339138 [Arab... 92 6e-36
ref|NP_001154461.2| putative U-box domain-containing protein 42 ... 90 1e-34
ref|NP_001154460.1| putative U-box domain-containing protein 42 ... 90 1e-34
ref|NP_177060.3| putative U-box domain-containing protein 42 [Ar... 90 1e-34
>ref|XP_002267498.2| PREDICTED: putative U-box domain-containing protein 42-like [Vitis
vinifera]
Length = 1055
Score = 113 bits (282), Expect(2) = 3e-42
Identities = 54/78 (69%), Positives = 65/78 (83%)
Frame = +3
Query: 3 GSEEMQMEMGSYLGEIVLGHDTNTYVAERAFPTLMKLLQTGNTSARKAAFKALVQISSYH 182
G EEM+MEMGSYLGEI LGHD+ TYVAERA P L+K+L TGNT +KAAFKAL QISSYH
Sbjct: 525 GCEEMKMEMGSYLGEIALGHDSKTYVAERASPALVKMLHTGNTLTKKAAFKALEQISSYH 584
Query: 183 QNNRTIVEAGIVPILIQD 236
N + +VEAGIV I++++
Sbjct: 585 PNGKILVEAGIVQIVVEE 602
Score = 84.0 bits (206), Expect(2) = 3e-42
Identities = 38/63 (60%), Positives = 48/63 (76%)
Frame = +2
Query: 254 RVHNELMNSTEESTKILANILESGITLDNLEVNTHGHTMGSKYIVYNLIEMLKQSNSETL 433
++HNE MNS +E+ IL N+LESGI +NL+VNTHGHTMGS YIVY++I MLK S + L
Sbjct: 608 KIHNETMNSIKEAAAILGNLLESGIEFENLQVNTHGHTMGSDYIVYSIIHMLKNSTPDKL 667
Query: 434 QFN 442
N
Sbjct: 668 NTN 670
>ref|XP_002888693.1| hypothetical protein ARALYDRAFT_339138 [Arabidopsis lyrata subsp.
lyrata] gi|297334534|gb|EFH64952.1| hypothetical protein
ARALYDRAFT_339138 [Arabidopsis lyrata subsp. lyrata]
Length = 1032
Score = 91.7 bits (226), Expect(2) = 6e-36
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +3
Query: 3 GSEEMQMEMGSYLGEIVLGHDTNTYVAERAFPTLMKLLQTGNTSARKAAFKALVQISSYH 182
GSEE Q+ M +YL EI +GH+ TYVAE+A P L+ L+Q+ NT AR+AAFKAL IS YH
Sbjct: 504 GSEETQVAMAAYLVEIDIGHEKKTYVAEKACPALIGLVQSENTDARRAAFKALAHISLYH 563
Query: 183 QNNRTIVEAGIVPILIQD 236
NN+ +VE GI+ I++++
Sbjct: 564 PNNQILVEVGIIKIMVEE 581
Score = 84.3 bits (207), Expect(2) = 6e-36
Identities = 39/68 (57%), Positives = 50/68 (73%)
Frame = +2
Query: 239 ELFVSRVHNELMNSTEESTKILANILESGITLDNLEVNTHGHTMGSKYIVYNLIEMLKQS 418
E+F RV ++LMNS E+ ILANILESG+ + EVNTHGHT+GS Y VYN+I+MLK S
Sbjct: 581 EMFTKRVFSDLMNSRNEAATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIQMLKNS 640
Query: 419 NSETLQFN 442
+ + L N
Sbjct: 641 SPDDLNIN 648
>ref|NP_001154461.2| putative U-box domain-containing protein 42 [Arabidopsis thaliana]
gi|332196746|gb|AEE34867.1| putative U-box
domain-containing protein 42 [Arabidopsis thaliana]
Length = 1061
Score = 89.7 bits (221), Expect(2) = 1e-34
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +3
Query: 3 GSEEMQMEMGSYLGEIVLGHDTNTYVAERAFPTLMKLLQTGNTSARKAAFKALVQISSYH 182
GSEE Q+ M +YL EI +GH+ TYVAE+A P L+ L+Q+ N AR+AAFKAL IS YH
Sbjct: 505 GSEETQVAMAAYLVEIDIGHEKKTYVAEKACPALIGLVQSENIDARRAAFKALAHISLYH 564
Query: 183 QNNRTIVEAGIVPILIQD 236
NN+ +VE GI+ I++++
Sbjct: 565 PNNKILVEVGIIKIMVEE 582
Score = 81.6 bits (200), Expect(2) = 1e-34
Identities = 38/68 (55%), Positives = 49/68 (72%)
Frame = +2
Query: 239 ELFVSRVHNELMNSTEESTKILANILESGITLDNLEVNTHGHTMGSKYIVYNLIEMLKQS 418
E+F RV ++LMNS E+ ILANILESG+ + EVNTHGHT+GS Y VYN+I MLK S
Sbjct: 582 EMFTKRVFSDLMNSRNEAATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKNS 641
Query: 419 NSETLQFN 442
+ + L +
Sbjct: 642 SPDDLNID 649
>ref|NP_001154460.1| putative U-box domain-containing protein 42 [Arabidopsis thaliana]
gi|332196745|gb|AEE34866.1| putative U-box
domain-containing protein 42 [Arabidopsis thaliana]
Length = 1035
Score = 89.7 bits (221), Expect(2) = 1e-34
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +3
Query: 3 GSEEMQMEMGSYLGEIVLGHDTNTYVAERAFPTLMKLLQTGNTSARKAAFKALVQISSYH 182
GSEE Q+ M +YL EI +GH+ TYVAE+A P L+ L+Q+ N AR+AAFKAL IS YH
Sbjct: 505 GSEETQVAMAAYLVEIDIGHEKKTYVAEKACPALIGLVQSENIDARRAAFKALAHISLYH 564
Query: 183 QNNRTIVEAGIVPILIQD 236
NN+ +VE GI+ I++++
Sbjct: 565 PNNKILVEVGIIKIMVEE 582
Score = 81.6 bits (200), Expect(2) = 1e-34
Identities = 38/68 (55%), Positives = 49/68 (72%)
Frame = +2
Query: 239 ELFVSRVHNELMNSTEESTKILANILESGITLDNLEVNTHGHTMGSKYIVYNLIEMLKQS 418
E+F RV ++LMNS E+ ILANILESG+ + EVNTHGHT+GS Y VYN+I MLK S
Sbjct: 582 EMFTKRVFSDLMNSRNEAATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKNS 641
Query: 419 NSETLQFN 442
+ + L +
Sbjct: 642 SPDDLNID 649
>ref|NP_177060.3| putative U-box domain-containing protein 42 [Arabidopsis thaliana]
gi|75333632|sp|Q9CAA7.1|PUB42_ARATH RecName:
Full=Putative U-box domain-containing protein 42;
AltName: Full=Plant U-box protein 42
gi|12323215|gb|AAG51587.1|AC011665_8 hypothetical
protein [Arabidopsis thaliana]
gi|332196744|gb|AEE34865.1| putative U-box
domain-containing protein 42 [Arabidopsis thaliana]
Length = 1033
Score = 89.7 bits (221), Expect(2) = 1e-34
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +3
Query: 3 GSEEMQMEMGSYLGEIVLGHDTNTYVAERAFPTLMKLLQTGNTSARKAAFKALVQISSYH 182
GSEE Q+ M +YL EI +GH+ TYVAE+A P L+ L+Q+ N AR+AAFKAL IS YH
Sbjct: 505 GSEETQVAMAAYLVEIDIGHEKKTYVAEKACPALIGLVQSENIDARRAAFKALAHISLYH 564
Query: 183 QNNRTIVEAGIVPILIQD 236
NN+ +VE GI+ I++++
Sbjct: 565 PNNKILVEVGIIKIMVEE 582
Score = 81.6 bits (200), Expect(2) = 1e-34
Identities = 38/68 (55%), Positives = 49/68 (72%)
Frame = +2
Query: 239 ELFVSRVHNELMNSTEESTKILANILESGITLDNLEVNTHGHTMGSKYIVYNLIEMLKQS 418
E+F RV ++LMNS E+ ILANILESG+ + EVNTHGHT+GS Y VYN+I MLK S
Sbjct: 582 EMFTKRVFSDLMNSRNEAATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKNS 641
Query: 419 NSETLQFN 442
+ + L +
Sbjct: 642 SPDDLNID 649