BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040346
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA99600.2| retrotransposon protein, putative, unclassified [...    49   4e-10
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...    53   2e-09
ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|2...    49   6e-08
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...    50   7e-08
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    48   9e-08

>gb|ABA99600.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1432

 Score = 48.5 bits (114), Expect(2) = 4e-10
 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = +2

Query: 167 VQGALQAGSDHSPLL--CQNFVIPKPHNAPFRFCKVWTTHEGFLYFVKDNWQQEIIG-TP 337
           +Q    +GSDH PLL  C +   P P    FRF   WT  +GF+  VK++WQQ++    P
Sbjct: 515 LQALSTSGSDHCPLLLTCGD---PGPKKRKFRFETYWTKIDGFMDVVKESWQQQVDSEDP 571

Query: 338 ILRLTQKLRRLKGALKIW 391
              L  KL RL   L  W
Sbjct: 572 YAVLYVKLARLYKKLSKW 589



 Score = 40.4 bits (93), Expect(2) = 4e-10
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +3

Query: 3   NEFYSAVNSGQLMECQSS*IKYTWCNNQHGSRRVLCKLDRVFMNEAWNDAF 155
           N F + +N  +L E      +YTWCN Q   R  L KLDR+F+   W ++F
Sbjct: 462 NAFRNKLNELELKEVYLFGRRYTWCNEQ--ERPTLVKLDRLFVTSHWEESF 510


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
           predicted protein [Populus trichocarpa]
          Length = 819

 Score = 53.1 bits (126), Expect(2) = 2e-09
 Identities = 26/67 (38%), Positives = 38/67 (56%)
 Frame = +2

Query: 191 SDHSPLLCQNFVIPKPHNAPFRFCKVWTTHEGFLYFVKDNWQQEIIGTPILRLTQKLRRL 370
           SDHSP++ +     +    PFRF  +W  H+ F+  VK  W Q   G P+ +L  KLR+L
Sbjct: 602 SDHSPMVVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLCCKLRKL 661

Query: 371 KGALKIW 391
           K  LK++
Sbjct: 662 KQELKLF 668



 Score = 33.1 bits (74), Expect(2) = 2e-09
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 15  SAVNSGQLMECQSS*IKYTWCNNQHGSRRVLCKLDRVFMNEAWNDAF 155
           + +   ++ + + S + YTW +NQ     ++ KLDRV +NE WN  F
Sbjct: 544 TCIREAKVDDLRYSGMHYTW-SNQCPENLIMRKLDRVLVNEKWNLKF 589


>ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|222858226|gb|EEE95773.1|
           predicted protein [Populus trichocarpa]
          Length = 809

 Score = 48.5 bits (114), Expect(2) = 6e-08
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +2

Query: 191 SDHSPLLCQNFVIPKPHNAPFRFCKVWTTHEGFLYFVKDNWQQEIIGTPILRLTQKLRRL 370
           SDHSP++ +     +    PFRF  +W  H+ F+  VK  W Q   G P+ +L  KLR+L
Sbjct: 749 SDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGGCPMYQLCCKLRKL 808

Query: 371 K 373
           K
Sbjct: 809 K 809



 Score = 33.1 bits (74), Expect(2) = 6e-08
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 15  SAVNSGQLMECQSS*IKYTWCNNQHGSRRVLCKLDRVFMNEAWNDAF 155
           + +   ++ + + S + YTW +NQ     ++ KLDRV +NE WN  F
Sbjct: 691 TCIREAKVDDLRYSGMHYTW-SNQCPENLIMRKLDRVLVNEKWNLKF 736


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 49.7 bits (117), Expect(2) = 7e-08
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +2

Query: 191 SDHSPLLCQNFVIPKPHNAPFRFCKVWTTHEGFLYFVKDNWQQEIIGTPILRLTQKLRRL 370
           SDHSP++ +     +    PFRF  +W  H+ F+  VK  W Q   G P+ +L  KLR+ 
Sbjct: 225 SDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGGCPMYQLCCKLRKQ 284

Query: 371 KGALKIW 391
           K  LK++
Sbjct: 285 KQELKLF 291



 Score = 31.6 bits (70), Expect(2) = 7e-08
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 66  YTWCNNQHGSRRVLCKLDRVFMNEAWN 146
           YTW +NQ     ++ KLDRV +NE WN
Sbjct: 184 YTW-SNQCPENLIMRKLDRVLVNEKWN 209


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 48.1 bits (113), Expect(2) = 9e-08
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +2

Query: 191 SDHSPLLCQNFVIPKPHNAPFRFCKVWTTHEGFLYFVKDNWQQEIIGTPILRLTQKLRRL 370
           SDH PLL          +  F+F K WT HE     V +NW +   G  + RL  KL+ +
Sbjct: 227 SDHHPLLMSMDFCTSQRSGNFKFFKTWTEHEDCRRIVAENWSKHTRGHGMTRLQAKLKHM 286

Query: 371 KGALKIW 391
           K   + W
Sbjct: 287 KQVFRHW 293



 Score = 32.7 bits (73), Expect(2) = 9e-08
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 66  YTWCNNQHGSRRVLCKLDRVFMNEAW 143
           YTW N + GS  V  +LDR   NE W
Sbjct: 180 YTWSNGRLGSDNVALRLDRAICNEEW 205