BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040278
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|2...   173   1e-41
ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
ref|XP_002885623.1| pentatricopeptide repeat-containing protein ...   165   3e-39
sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-c...   164   5e-39
ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   160   8e-38

>ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|222854713|gb|EEE92260.1|
           predicted protein [Populus trichocarpa]
          Length = 590

 Score =  173 bits (438), Expect = 1e-41
 Identities = 80/93 (86%), Positives = 85/93 (91%)
 Frame = +1

Query: 1   GYVPDTSHVLLFMDQQEREVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMCSDCHSAF 180
           GYVPD+SHVLL MDQQERE KLQYHSEKLALAFALLNT PGSTI IKKNIR+C DCHSAF
Sbjct: 498 GYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAF 557

Query: 181 KFVSKVMEREIVVRDTNRFHHFNDGCCSCGDYW 279
           KFVSK++EREI+VRDTNRFHHF DG CSC DYW
Sbjct: 558 KFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590


>ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  166 bits (419), Expect = 2e-39
 Identities = 75/93 (80%), Positives = 84/93 (90%)
 Frame = +1

Query: 1   GYVPDTSHVLLFMDQQEREVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMCSDCHSAF 180
           GYVPDTSHVLLF+DQQE+E+ LQYHSEKLAL+FALLNT PGSTI I KNIR+C DCHSA 
Sbjct: 555 GYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAI 614

Query: 181 KFVSKVMEREIVVRDTNRFHHFNDGCCSCGDYW 279
           K+VS V++REI+VRDTNRFHHF DG CSCGDYW
Sbjct: 615 KYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647


>ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331463|gb|EFH61882.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 624

 Score =  165 bits (418), Expect = 3e-39
 Identities = 74/93 (79%), Positives = 81/93 (87%)
 Frame = +1

Query: 1   GYVPDTSHVLLFMDQQEREVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMCSDCHSAF 180
           GYVPDTSHV++ +DQQEREV LQYHSEK+ALAFALLNT PGSTIHIKKNIR+C DCHSA 
Sbjct: 532 GYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAI 591

Query: 181 KFVSKVMEREIVVRDTNRFHHFNDGCCSCGDYW 279
           K  SK + REI+VRDTNRFHHF DG CSC DYW
Sbjct: 592 KLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624


>sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
           gi|9294669|dbj|BAB03018.1| unnamed protein product
           [Arabidopsis thaliana]
          Length = 633

 Score =  164 bits (416), Expect = 5e-39
 Identities = 74/93 (79%), Positives = 82/93 (88%)
 Frame = +1

Query: 1   GYVPDTSHVLLFMDQQEREVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMCSDCHSAF 180
           GYVPDTSHV++ +DQQEREV LQYHSEK+ALAFALLNT PGSTIHIKKNIR+C DCH+A 
Sbjct: 541 GYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAI 600

Query: 181 KFVSKVMEREIVVRDTNRFHHFNDGCCSCGDYW 279
           K  SKV+ REI+VRDTNRFHHF DG CSC DYW
Sbjct: 601 KLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633


>ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  160 bits (406), Expect = 8e-38
 Identities = 73/93 (78%), Positives = 81/93 (87%)
 Frame = +1

Query: 1   GYVPDTSHVLLFMDQQEREVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMCSDCHSAF 180
           GYVPDTSHVL FM+QQ+RE+KLQYHSEKLALAFA+L T PG TI IKKNIR+C DCHSAF
Sbjct: 585 GYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAF 644

Query: 181 KFVSKVMEREIVVRDTNRFHHFNDGCCSCGDYW 279
           KF S+V+ REI+VRDTNRFHHF  G CSC DYW
Sbjct: 645 KFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677