BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040221
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-depe...    42   2e-08
emb|CAN71460.1| hypothetical protein VITISV_033508 [Vitis vinifera]    42   2e-08
ref|XP_002316148.1| predicted protein [Populus trichocarpa] gi|2...    42   6e-08
ref|XP_003547002.1| PREDICTED: pre-mRNA-splicing factor ATP-depe...    40   7e-08
ref|XP_003542053.1| PREDICTED: pre-mRNA-splicing factor ATP-depe...    40   7e-08

>ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
            PRP16-like [Vitis vinifera]
          Length = 1289

 Score = 41.6 bits (96), Expect(3) = 2e-08
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = +2

Query: 41   LLNVXXXXXXXXXXXXWCSDHILHVKGFRKAREV 142
            LLNV            WC+DH LHVKG RKAREV
Sbjct: 1075 LLNVYQQWKANQYRGDWCNDHFLHVKGLRKAREV 1108



 Score = 30.8 bits (68), Expect(3) = 2e-08
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 211  IVRKAIGCSYFHNSARLK 264
            +VRKAI  +YFHN+ARLK
Sbjct: 1132 VVRKAICSAYFHNAARLK 1149



 Score = 30.0 bits (66), Expect(3) = 2e-08
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 150  LLYILKTMKIPIT*CGP 200
            LL ILKT+KIP+T CGP
Sbjct: 1112 LLDILKTLKIPLTSCGP 1128


>emb|CAN71460.1| hypothetical protein VITISV_033508 [Vitis vinifera]
          Length = 855

 Score = 41.6 bits (96), Expect(3) = 2e-08
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = +2

Query: 41  LLNVXXXXXXXXXXXXWCSDHILHVKGFRKAREV 142
           LLNV            WC+DH LHVKG RKAREV
Sbjct: 641 LLNVYQQWKANQYRGDWCNDHFLHVKGLRKAREV 674



 Score = 30.8 bits (68), Expect(3) = 2e-08
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 211 IVRKAIGCSYFHNSARLK 264
           +VRKAI  +YFHN+ARLK
Sbjct: 698 VVRKAICSAYFHNAARLK 715



 Score = 30.0 bits (66), Expect(3) = 2e-08
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 150 LLYILKTMKIPIT*CGP 200
           LL ILKT+KIP+T CGP
Sbjct: 678 LLDILKTLKIPLTSCGP 694


>ref|XP_002316148.1| predicted protein [Populus trichocarpa] gi|222865188|gb|EEF02319.1|
           predicted protein [Populus trichocarpa]
          Length = 499

 Score = 41.6 bits (96), Expect(3) = 6e-08
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = +2

Query: 41  LLNVXXXXXXXXXXXXWCSDHILHVKGFRKAREV 142
           LLNV            WC+DH LHVKG RKAREV
Sbjct: 285 LLNVYLQWKEHQYRGDWCNDHFLHVKGLRKAREV 318



 Score = 32.0 bits (71), Expect(3) = 6e-08
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 211 IVRKAIGCSYFHNSARLK 264
           +VRKAI  +YFHNSARLK
Sbjct: 342 VVRKAICSAYFHNSARLK 359



 Score = 27.3 bits (59), Expect(3) = 6e-08
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 150 LLYILKTMKIPIT*CG 197
           LL ILKT+KIP+T CG
Sbjct: 322 LLDILKTLKIPLTSCG 337


>ref|XP_003547002.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
            PRP16-like [Glycine max]
          Length = 1272

 Score = 40.0 bits (92), Expect(3) = 7e-08
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +2

Query: 14   KSNNPTIYRLLNVXXXXXXXXXXXXWCSDHILHVKGFRKAREV 142
            +S++ T+Y   NV            WC+DH LHVKG RKAREV
Sbjct: 1052 ESDHLTLY---NVYQQWKQHDYRGDWCNDHFLHVKGLRKAREV 1091



 Score = 33.1 bits (74), Expect(3) = 7e-08
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 205  TCIVRKAIGCSYFHNSARLK 264
            T IVRKAI  +YFHNSARLK
Sbjct: 1113 TDIVRKAICSAYFHNSARLK 1132



 Score = 27.3 bits (59), Expect(3) = 7e-08
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 150  LLYILKTMKIPIT*CGPSDVYCKK 221
            LL ILKT+KIP+T C P     +K
Sbjct: 1095 LLDILKTLKIPLTSCWPDTDIVRK 1118


>ref|XP_003542053.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
            PRP16-like [Glycine max]
          Length = 1270

 Score = 40.0 bits (92), Expect(3) = 7e-08
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +2

Query: 14   KSNNPTIYRLLNVXXXXXXXXXXXXWCSDHILHVKGFRKAREV 142
            +S++ T+Y   NV            WC+DH LHVKG RKAREV
Sbjct: 1050 ESDHLTLY---NVYQQWKQHDYRGDWCNDHFLHVKGLRKAREV 1089



 Score = 33.1 bits (74), Expect(3) = 7e-08
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 205  TCIVRKAIGCSYFHNSARLK 264
            T IVRKAI  +YFHNSARLK
Sbjct: 1111 TDIVRKAICSAYFHNSARLK 1130



 Score = 27.3 bits (59), Expect(3) = 7e-08
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 150  LLYILKTMKIPIT*CGPSDVYCKK 221
            LL ILKT+KIP+T C P     +K
Sbjct: 1093 LLDILKTLKIPLTSCWPDTDIVRK 1116