BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040207
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]   140   8e-32
ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26
ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...    92   3e-17
ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containi...    92   3e-17

>emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  140 bits (354), Expect = 8e-32
 Identities = 65/107 (60%), Positives = 84/107 (78%)
 Frame = +3

Query: 3   SLDDARKLFDKITERTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGFKPDKYLIPTVLK 182
           SL+DARKL D+I  RTVPAY+ LI + CR+++W+++     LMV EG  PDKYL+PT+LK
Sbjct: 132 SLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILK 191

Query: 183 ACSALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCGDLGSSR 323
           ACSA+ +   G+MVHG+V+R  +E DVFVGNALI  Y+NCGDLGSSR
Sbjct: 192 ACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSR 238



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = +3

Query: 6   LDDARKLFDKITERTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGFKPDKYLIPTVLKA 185
           +D A K+F +I  R   +++ L+      ++ E+ + L   M+ EG +P       +  A
Sbjct: 588 MDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPA 647

Query: 186 CSALEILGFGRMVHGYVVRNKL-ELDVFVGNALIDMYANCGDL 311
           C  +  + FGR +HGY  + +L EL   + +ALIDMYA CG +
Sbjct: 648 CGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSI 690



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/58 (41%), Positives = 37/58 (63%)
 Frame = +3

Query: 147 KPDKYLIPTVLKACSALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCGDLGSS 320
           +P+   I   L AC+ L +   G+ +HGY +RN  E ++FV +AL+DMYA C D+ S+
Sbjct: 534 RPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSA 591


>ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 406

 Score =  122 bits (305), Expect = 4e-26
 Identities = 53/105 (50%), Positives = 75/105 (71%)
 Frame = +3

Query: 6   LDDARKLFDKITERTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGFKPDKYLIPTVLKA 185
           +D   K+FD+I ERT+PAY+ LI A CR+++W ++      MVDEG  PDKYL+PT+LKA
Sbjct: 118 VDSDSKVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKA 177

Query: 186 CSALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCGDLGSS 320
           CS  +++  G+M HGY +R ++  D+ + NAL+D Y NCGDL SS
Sbjct: 178 CSRRQMVKTGKMAHGYAIRKRMVSDIVIENALMDFYGNCGDLSSS 222


>ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 677

 Score =  122 bits (305), Expect = 4e-26
 Identities = 53/105 (50%), Positives = 75/105 (71%)
 Frame = +3

Query: 6   LDDARKLFDKITERTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGFKPDKYLIPTVLKA 185
           +D   K+FD+I ERT+PAY+ LI A CR+++W ++      MVDEG  PDKYL+PT+LKA
Sbjct: 118 VDSDSKVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKA 177

Query: 186 CSALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCGDLGSS 320
           CS  +++  G+M HGY +R ++  D+ + NAL+D Y NCGDL SS
Sbjct: 178 CSRRQMVKTGKMAHGYAIRKRMVSDIVIENALMDFYGNCGDLSSS 222



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 23/57 (40%), Positives = 38/57 (66%)
 Frame = +3

Query: 150 PDKYLIPTVLKACSALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCGDLGSS 320
           P+   +   L AC++L +L  G+ +HGY++RN    + F+ +ALI+MYA CGD+ S+
Sbjct: 518 PNTVTLTAALAACASLNLLHKGKEIHGYMLRNYFVNNYFISSALINMYAKCGDIDSA 574


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/101 (46%), Positives = 66/101 (65%)
 Frame = +3

Query: 3   SLDDARKLFDKITERTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGFKPDKYLIPTVLK 182
           SL +AR LFDKI ++ +  ++VLI         ++ + L   M+D G +PD + +P VLK
Sbjct: 97  SLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLK 156

Query: 183 ACSALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCG 305
           ACSAL  +G GR +H YV+++  E D+FVG ALIDMYA CG
Sbjct: 157 ACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCG 197



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/100 (30%), Positives = 54/100 (54%)
 Frame = +3

Query: 12  DARKLFDKITERTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGFKPDKYLIPTVLKACS 191
           DA ++FDKI  R    ++ ++ A  +    ++ + L   M   G +P +  + TV+ + +
Sbjct: 201 DAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSA 260

Query: 192 ALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCGDL 311
            +  L +GR +HG+  R+  + +  V  ALIDMYA CG +
Sbjct: 261 DVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSV 300


>ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/102 (41%), Positives = 66/102 (64%)
 Frame = +3

Query: 6   LDDARKLFDKITERTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGFKPDKYLIPTVLKA 185
           LD+ARK+FD++ ER +  +S +IGAC R  +WE+VV L   M+  G  PD +L+P VLKA
Sbjct: 134 LDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLPDDFLLPKVLKA 193

Query: 186 CSALEILGFGRMVHGYVVRNKLELDVFVGNALIDMYANCGDL 311
           C     +  GR++H  V+R  +   + V N+++ +YA CG++
Sbjct: 194 CGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEM 235