BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040171
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631269.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   114   6e-24
emb|CBI28530.3| unnamed protein product [Vitis vinifera]              114   6e-24
ref|XP_003622167.1| Pentatricopeptide repeat protein [Medicago t...   112   3e-23
ref|XP_003550790.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
ref|XP_002514722.1| pentatricopeptide repeat-containing protein,...   106   2e-21

>ref|XP_003631269.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61370, mitochondrial-like [Vitis vinifera]
          Length = 505

 Score =  114 bits (286), Expect = 6e-24
 Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
 Frame = +1

Query: 1   PAAASFNILLSCLGKTRRVKEAIKVLNSMRK----SDWVSXXXXXXXXXXSGRFGKGNMI 168
           P + S+NILLSCLG+TRRVKE+ ++L+ M++     DWVS          +GRFGKGN I
Sbjct: 286 PTSISYNILLSCLGRTRRVKESCRILDLMKRLGCSPDWVSYYLVARVLYLTGRFGKGNQI 345

Query: 169 VDEMIKEGVTPEPRFYHDLLGVLCGVERVGHVLELF 276
           VDEMI+EG+ P+ +FY+DL+GVLCGVERV + LE+F
Sbjct: 346 VDEMIEEGLVPDRKFYYDLIGVLCGVERVNYALEMF 381


>emb|CBI28530.3| unnamed protein product [Vitis vinifera]
          Length = 452

 Score =  114 bits (286), Expect = 6e-24
 Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
 Frame = +1

Query: 1   PAAASFNILLSCLGKTRRVKEAIKVLNSMRK----SDWVSXXXXXXXXXXSGRFGKGNMI 168
           P + S+NILLSCLG+TRRVKE+ ++L+ M++     DWVS          +GRFGKGN I
Sbjct: 255 PTSISYNILLSCLGRTRRVKESCRILDLMKRLGCSPDWVSYYLVARVLYLTGRFGKGNQI 314

Query: 169 VDEMIKEGVTPEPRFYHDLLGVLCGVERVGHVLELF 276
           VDEMI+EG+ P+ +FY+DL+GVLCGVERV + LE+F
Sbjct: 315 VDEMIEEGLVPDRKFYYDLIGVLCGVERVNYALEMF 350


>ref|XP_003622167.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355497182|gb|AES78385.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 563

 Score =  112 bits (280), Expect = 3e-23
 Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
 Frame = +1

Query: 1   PAAASFNILLSCLGKTRRVKEAIKVLNSMRKS----DWVSXXXXXXXXXXSGRFGKGNMI 168
           P + S+NILLSCLGKTRRVKE+ ++L +M KS    DWVS          SGRFGKG  I
Sbjct: 360 PTSISYNILLSCLGKTRRVKESCQILEAMNKSGVAPDWVSYYLVSRVLFLSGRFGKGKEI 419

Query: 169 VDEMIKEGVTPEPRFYHDLLGVLCGVERVGHVLELF 276
           VD+MI++G+ P  +FY+ L+G+LCGVERV H L+LF
Sbjct: 420 VDQMIEKGLVPNHKFYYSLIGILCGVERVNHALDLF 455


>ref|XP_003550790.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Glycine max]
          Length = 451

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/96 (54%), Positives = 68/96 (70%), Gaps = 4/96 (4%)
 Frame = +1

Query: 1   PAAASFNILLSCLGKTRRVKEAIKVLNSMRKS----DWVSXXXXXXXXXXSGRFGKGNMI 168
           P + S+NILLSCLGKTRRVKE+ ++L +M+ S    DWVS          SGRFGKG  +
Sbjct: 253 PTSISYNILLSCLGKTRRVKESCQILETMKISGCDPDWVSYYLVAKVLFLSGRFGKGKEM 312

Query: 169 VDEMIKEGVTPEPRFYHDLLGVLCGVERVGHVLELF 276
           VD+MI +G+ P  +FY+ L+G+LCGVERV + LELF
Sbjct: 313 VDQMIGKGLVPNHKFYYSLIGILCGVERVNYALELF 348


>ref|XP_002514722.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546326|gb|EEF47828.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 479

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/96 (54%), Positives = 68/96 (70%), Gaps = 4/96 (4%)
 Frame = +1

Query: 1   PAAASFNILLSCLGKTRRVKEAIKVLNSMRKS----DWVSXXXXXXXXXXSGRFGKGNMI 168
           P + S+NILLSCLG+ RRV+E+ K+L  M+KS    DWVS          +GRFGKGN I
Sbjct: 272 PNSISYNILLSCLGRVRRVQESCKILELMKKSSCAPDWVSYYLVAKVLYLTGRFGKGNKI 331

Query: 169 VDEMIKEGVTPEPRFYHDLLGVLCGVERVGHVLELF 276
           VDEMI+  + P+ +FY+DL+G+LCGVERV   L+LF
Sbjct: 332 VDEMIERRLVPDRKFYYDLIGILCGVERVNFALKLF 367