BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040146
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumi...    38   2e-08
ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycin...    37   4e-07
ref|XP_003593881.1| DNA-directed RNA polymerase subunit beta [Me...    35   7e-07
ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycin...    37   1e-06
ref|XP_002874670.1| predicted protein [Arabidopsis lyrata subsp....    37   7e-06

>ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]
           gi|449490588|ref|XP_004158648.1| PREDICTED: F-box
           protein SKIP19-like [Cucumis sativus]
          Length = 311

 Score = 37.7 bits (86), Expect(3) = 2e-08
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = -1

Query: 131 GRLLKMCIDKIRELRLPDDPTDDFEY--DIGEDSD 33
           G+L   C +KI++LRLP DPTDD E+  +I +D D
Sbjct: 235 GQLGAKCSEKIKDLRLPHDPTDDCEFTTEIVDDDD 269



 Score = 33.1 bits (74), Expect(3) = 2e-08
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 196 GLRAILKGCPYIEYLDLRHC 137
           GL AIL GC  +E LDLRHC
Sbjct: 209 GLEAILDGCSALESLDLRHC 228



 Score = 31.6 bits (70), Expect(3) = 2e-08
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -3

Query: 261 IAKHMSQLRHLHLFGNFLNN 202
           IA++M  LRHLH+FGN L N
Sbjct: 188 IAENMPNLRHLHIFGNNLTN 207


>ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 318

 Score = 37.4 bits (85), Expect(3) = 4e-07
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -1

Query: 131 GRLLKMCIDKIRELRLPDDPTDD--FEYDIGEDSDD 30
           G L K C ++I+ELRLP DPTDD  FE D+   S D
Sbjct: 241 GSLGKRCAEQIKELRLPCDPTDDCPFEADVDYGSLD 276



 Score = 33.9 bits (76), Expect(3) = 4e-07
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -2

Query: 196 GLRAILKGCPYIEYLDLRHC 137
           GL AIL GCP++E LDLR C
Sbjct: 215 GLLAILDGCPHLESLDLRQC 234



 Score = 26.6 bits (57), Expect(3) = 4e-07
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 261 IAKHMSQLRHLHLFGNFLNND 199
           IA+ M  L HL LFGN L N+
Sbjct: 194 IAETMPTLHHLQLFGNKLTNE 214


>ref|XP_003593881.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355482929|gb|AES64132.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 208

 Score = 34.7 bits (78), Expect(3) = 7e-07
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -2

Query: 196 GLRAILKGCPYIEYLDLRHC 137
           GLRAIL GCP +E LD+R C
Sbjct: 39  GLRAILDGCPLLESLDIRQC 58



 Score = 33.1 bits (74), Expect(3) = 7e-07
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
 Frame = -1

Query: 134 KGRLLKMCIDKIRELRLPDDPTDDF-----EYDIGEDSDD 30
           +G L K C ++I++LRLP D T+D+      YD G   +D
Sbjct: 64  RGSLGKKCREQIKDLRLPYDATEDYPFQVIAYDYGSPDED 103



 Score = 29.3 bits (64), Expect(3) = 7e-07
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -3

Query: 261 IAKHMSQLRHLHLFGNFLNND 199
           IA+ M  LRHL LFGN ++ND
Sbjct: 18  IAETMPGLRHLQLFGNKMSND 38


>ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 311

 Score = 37.4 bits (85), Expect(3) = 1e-06
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -1

Query: 131 GRLLKMCIDKIRELRLPDDPTDDFEYD 51
           G L K C ++I+ELRLP DPTDD+ ++
Sbjct: 233 GSLGKRCAEQIKELRLPCDPTDDYPFE 259



 Score = 32.7 bits (73), Expect(3) = 1e-06
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 196 GLRAILKGCPYIEYLDLRHC 137
           GL AIL GCP +E LDLR C
Sbjct: 207 GLLAILDGCPLLESLDLRQC 226



 Score = 26.2 bits (56), Expect(3) = 1e-06
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 261 IAKHMSQLRHLHLFGNFLNND 199
           IA+ M  L HL LFGN L N+
Sbjct: 186 IAETMPGLHHLQLFGNKLTNE 206


>ref|XP_002874670.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297320507|gb|EFH50929.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 483

 Score = 37.0 bits (84), Expect(3) = 7e-06
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -1

Query: 131 GRLLKMCIDKIRELRLPDDPTDDFEYDIG 45
           G L K C+++I+ELR P D T D+ Y+IG
Sbjct: 126 GNLEKRCLERIKELRRPGDSTADYPYNIG 154



 Score = 30.0 bits (66), Expect(3) = 7e-06
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 196 GLRAILKGCPYIEYLDLRHC 137
           GL  IL  CP++E+LD+R C
Sbjct: 100 GLNVILDRCPHLEHLDVRKC 119



 Score = 26.6 bits (57), Expect(3) = 7e-06
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 261 IAKHMSQLRHLHLFGNFLNN 202
           IA+ M +LRHL L GN L N
Sbjct: 79  IAESMPKLRHLQLMGNGLTN 98