BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040073
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containi...   108   3e-22
ref|XP_002517091.1| pentatricopeptide repeat-containing protein,...   105   5e-21
ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago t...   101   6e-20
ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containi...    99   3e-19
ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18

>ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  108 bits (271), Expect = 3e-22
 Identities = 50/99 (50%), Positives = 69/99 (69%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGYIEKSSVECN 182
           Y + +     + +FN ML S V PNEVTM+A+LS C   GD  +G+ +H +I +  + C+
Sbjct: 228 YARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCS 287

Query: 183 LNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           LN+LNA++DMYVKCG L TAREIF+ M  RDV+SWT +L
Sbjct: 288 LNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLL 326



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRS-GVVPNEVTMVAVLSTCCVIGDLRLGRLVH-GYIEKSSVE 176
           Y Q S P   L +F+ M+   G+VP E T+V VLS    +G L +G+ +H  ++ K  ++
Sbjct: 360 YSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQ 419

Query: 177 CNLNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
            +L + NA+MDMY KCG ++ A ++F  M  +++ SW  M+
Sbjct: 420 VSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMI 460



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/99 (32%), Positives = 52/99 (52%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGYIEKSSVECN 182
           Y + + PS+G   F +M+R+    +  + V  L  C    +  +G  VH  I K   + +
Sbjct: 127 YCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSD 186

Query: 183 LNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           L + N L+  YV+ G L  AR++FD   V+DV +WT M+
Sbjct: 187 LFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMI 225


>ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543726|gb|EEF45254.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 606

 Score =  105 bits (261), Expect = 5e-21
 Identities = 47/89 (52%), Positives = 67/89 (75%)
 Frame = +3

Query: 33  LRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGYIEKSSVECNLNMLNALMDM 212
           L++F+ ML S V PNEVTM++VLS C   GDL LG+ +H Y+ + ++  ++N++NA++DM
Sbjct: 344 LKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDM 403

Query: 213 YVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           YVKCG L  AREIFD M  +DV+SWT M+
Sbjct: 404 YVKCGCLVAAREIFDSMGTKDVFSWTSMV 432



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGY-IEKSSVEC 179
           Y Q + P   + +F+ M+  G++P E T+V VLS C  +G L LGRL+H Y IE+     
Sbjct: 466 YSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGT 525

Query: 180 NLNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           ++ + NAL+DMY KCG ++ A  +F+ M  RD+ SW  M+
Sbjct: 526 SVIIANALIDMYAKCGVIDAAARVFNGMPGRDLVSWNSMI 565


>ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355500337|gb|AES81540.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 1024

 Score =  101 bits (252), Expect = 6e-20
 Identities = 47/99 (47%), Positives = 67/99 (67%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGYIEKSSVECN 182
           Y         + +F  ML S V PNEVT++AV+S C  +G+L +G+ VH  +E+ ++ C+
Sbjct: 333 YAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCS 392

Query: 183 LNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           L++ NAL+DMYVKC  L  ARE+FDRM  +DVYSWT M+
Sbjct: 393 LSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMV 431



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGY-IEKSSVEC 179
           Y Q + P   L++F+EM+  GVVP E T+V+VLS C  +  L LG  +H Y +    +  
Sbjct: 465 YSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPL 524

Query: 180 NLNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           ++ + NA++DMY KCG ++ A E+F  M  R++ SW  M+
Sbjct: 525 SVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMI 564


>ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449470513|ref|XP_004152961.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449523079|ref|XP_004168552.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 47/99 (47%), Positives = 65/99 (65%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGYIEKSSVECN 182
           + Q + P   L +F +M R  V+PN VTMV VLS C    DL  GR V  YIE+  ++ +
Sbjct: 202 FAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVD 261

Query: 183 LNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           L + NA++DMY KCG ++ A+++FD M  RDV+SWTIML
Sbjct: 262 LTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIML 300



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVV-PNEVTMVAVLSTCCVIGDLRLGRLVHGYIEKSSVEC 179
           Y Q   P   L IFNE+  S +  P+EVT+V+ LS C  +G + LG  +H YI++  +  
Sbjct: 334 YEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVL 393

Query: 180 NLNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           N +++++L+DMY KCG L  A E+F  +  RDVY W+ M+
Sbjct: 394 NCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMI 433


>ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
           gi|449513125|ref|XP_004164238.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 44/99 (44%), Positives = 65/99 (65%)
 Frame = +3

Query: 3   YVQKSIPSVGLRIFNEMLRSGVVPNEVTMVAVLSTCCVIGDLRLGRLVHGYIEKSSVECN 182
           Y Q  +P+  L++F  ML +  +PNEVT++AVLS C  +G L  GR +H YIE   ++ N
Sbjct: 248 YAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQIN 307

Query: 183 LNMLNALMDMYVKCGRLNTAREIFDRMVVRDVYSWTIML 299
           +++  AL+DMY KCG L  AR +FDR+  +DV +W  M+
Sbjct: 308 VHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMI 346